Click here to switch to the map view.

The map label for this gene is yjfH [C]

Identifier: 83720773

GI number: 83720773

Start: 2313577

End: 2314422

Strand: Direct

Name: yjfH [C]

Synonym: BTH_I2042

Alternate gene names: 83720773

Gene position: 2313577-2314422 (Clockwise)

Preceding gene: 83721502

Following gene: 83718906

Centisome position: 60.74

GC content: 70.09

Gene sequence:

>846_bases
GTGCGAGCATCACCGGCGCTCGTTCGCACCGGTGCGCGAAGCCTTCGATCTGATTCGATGAAAGCGATCACTTCCCGCGA
CAATCCGCTGTACAAGCGCCTGAAGGCGCTCGCGGGATCGACCCATCAGCAGCGCCGCGGCGGCCAGGCGCTCCTCGAGG
GGCTGCATCTCGCGAGCGCCTATCTCGATGCGGCGGGGCAGCCGGAGCTGTGCGTCGTCACCGACGGCGCGCTCTCGCAC
GCGGAGGCGCGCGAGACCGTCGCGCGCATCGAGCCGGCGCGGGTCGTCACGCTGCCCGACGCGCTGTTCGGACAACTGTC
GAACGTCGTCAACGGCGTCGGGCTGTTGCTGCTCGTCGCAAGGCCGGCGCCAGCGTTGCCCGAGCGCGTGTCGAACACGT
CGGTCGTGCTCGATGGCGTGCAGGATGCGGGCAACGTCGGCTCGATCCTGCGCAGCGCGGCCGCGGCGGGCGTGAAGCAG
GTGTTCTGCGCGCCGGGCACCGCGTACGCGTGGTCGTCGAAGGTGCTGCGCTCGGCGATGGGCGCGCATTTCCTGCTCGA
CATCCACGAGGATGTCGACGCCGGCACGCTGATCGAGCGGCTTGCGATTCCGGTCGCGCTGACCGATTCGCACGGCGCGC
GCGCGATCTACGACTGCGATCTGACGGGGCCGGTCGCGTGGGTATTCGGCAACGAAGGGGCGGGCGTGTCCGTCCGGTGG
CGCGACGCGGCGACGCACCGTGTGACGATTCCGCAGCCGGGCGGGATGGAATCGCTGAACGTGGCCGCTGCGGCTGCGGT
TTGCCTTTTCGAGCAATGCCGGCAGCAACGCGCGCCCGGCGCATGA

Upstream 100 bases:

>100_bases
TGCTCGTCGAGCTGCATCAGCAGTTTCCGATGTACGGATTCGATGCGCACGCGGGCTACGGCACGCCGCAGCACCTCGCC
GCCTTGCGCGAGCATGGGCC

Downstream 100 bases:

>100_bases
CGCACGCGCGCTTTTTCTCTTTCTCGCGATCGCGGTGATTCGACGGCGGCGCGCCGGCTTGCGCGATCCCGCGTCGTCGA
TCGCGCAAGCTGCCCGCACC

Product: RNA methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 281

Protein sequence:

>281_residues
MRASPALVRTGARSLRSDSMKAITSRDNPLYKRLKALAGSTHQQRRGGQALLEGLHLASAYLDAAGQPELCVVTDGALSH
AEARETVARIEPARVVTLPDALFGQLSNVVNGVGLLLLVARPAPALPERVSNTSVVLDGVQDAGNVGSILRSAAAAGVKQ
VFCAPGTAYAWSSKVLRSAMGAHFLLDIHEDVDAGTLIERLAIPVALTDSHGARAIYDCDLTGPVAWVFGNEGAGVSVRW
RDAATHRVTIPQPGGMESLNVAAAAAVCLFEQCRQQRAPGA

Sequences:

>Translated_281_residues
MRASPALVRTGARSLRSDSMKAITSRDNPLYKRLKALAGSTHQQRRGGQALLEGLHLASAYLDAAGQPELCVVTDGALSH
AEARETVARIEPARVVTLPDALFGQLSNVVNGVGLLLLVARPAPALPERVSNTSVVLDGVQDAGNVGSILRSAAAAGVKQ
VFCAPGTAYAWSSKVLRSAMGAHFLLDIHEDVDAGTLIERLAIPVALTDSHGARAIYDCDLTGPVAWVFGNEGAGVSVRW
RDAATHRVTIPQPGGMESLNVAAAAAVCLFEQCRQQRAPGA
>Mature_281_residues
MRASPALVRTGARSLRSDSMKAITSRDNPLYKRLKALAGSTHQQRRGGQALLEGLHLASAYLDAAGQPELCVVTDGALSH
AEARETVARIEPARVVTLPDALFGQLSNVVNGVGLLLLVARPAPALPERVSNTSVVLDGVQDAGNVGSILRSAAAAGVKQ
VFCAPGTAYAWSSKVLRSAMGAHFLLDIHEDVDAGTLIERLAIPVALTDSHGARAIYDCDLTGPVAWVFGNEGAGVSVRW
RDAATHRVTIPQPGGMESLNVAAAAAVCLFEQCRQQRAPGA

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Escherichia coli, GI1790623, Length=145, Percent_Identity=31.7241379310345, Blast_Score=71, Evalue=7e-14,
Organism=Drosophila melanogaster, GI24666840, Length=282, Percent_Identity=26.241134751773, Blast_Score=68, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 29397; Mature: 29397

Theoretical pI: Translated: 8.24; Mature: 8.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRASPALVRTGARSLRSDSMKAITSRDNPLYKRLKALAGSTHQQRRGGQALLEGLHLASA
CCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHH
YLDAAGQPELCVVTDGALSHAEARETVARIEPARVVTLPDALFGQLSNVVNGVGLLLLVA
HHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHEEEEEE
RPAPALPERVSNTSVVLDGVQDAGNVGSILRSAAAAGVKQVFCAPGTAYAWSSKVLRSAM
CCCCCCHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC
GAHFLLDIHEDVDAGTLIERLAIPVALTDSHGARAIYDCDLTGPVAWVFGNEGAGVSVRW
CCEEEEEECCCCCHHHHHHHHHCCEEEECCCCCEEEEECCCCCCEEEEECCCCCCEEEEE
RDAATHRVTIPQPGGMESLNVAAAAAVCLFEQCRQQRAPGA
ECCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MRASPALVRTGARSLRSDSMKAITSRDNPLYKRLKALAGSTHQQRRGGQALLEGLHLASA
CCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHH
YLDAAGQPELCVVTDGALSHAEARETVARIEPARVVTLPDALFGQLSNVVNGVGLLLLVA
HHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHEEEEEE
RPAPALPERVSNTSVVLDGVQDAGNVGSILRSAAAAGVKQVFCAPGTAYAWSSKVLRSAM
CCCCCCHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC
GAHFLLDIHEDVDAGTLIERLAIPVALTDSHGARAIYDCDLTGPVAWVFGNEGAGVSVRW
CCEEEEEECCCCCHHHHHHHHHCCEEEECCCCCEEEEECCCCCCEEEEECCCCCCEEEEE
RDAATHRVTIPQPGGMESLNVAAAAAVCLFEQCRQQRAPGA
ECCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]