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The map label for this gene is rsmB [H]

Identifier: 83719688

GI number: 83719688

Start: 890070

End: 891332

Strand: Direct

Name: rsmB [H]

Synonym: BTH_I0773

Alternate gene names: 83719688

Gene position: 890070-891332 (Clockwise)

Preceding gene: 83720299

Following gene: 83718952

Centisome position: 23.37

GC content: 70.23

Gene sequence:

>1263_bases
ATGAAGCTGCACGGTTTCCTGATTGGCCAGACCGAGGCGCTCCTTGCCGACGTCCTGAAATTCGCCGGCCCGGCCGACGT
GACGACGAGCCGCTTTTTCCGCGCGCATCCGAAGCTCGGCCACGCCGAGCGCGGCGTGATCGCCGAAGCGGTGTTTGCGG
TGCTGCGGCGGAAGATGGAGTACGCACACCTTGCCGAAAGCGGCACTGGCGCGCCGGCGCGGCGCTTGGTGCTGCTCGGG
CTGATGCAGACGGTCGGCCGCTCGGCGGTGAAGCCGTTCGTGTCGGACGCCGAGTGGGCGTGGCTCGACCACGTCGCGAA
GATCGATCCCGCGAGCTTGCCGCTGCGCGTGCGCACGAACCTGCCCGACTGGATTCATCAGGCGCTTGCCGAGCGCATGG
GCGCCGACGAGCTTGCGCAGTTCGCCGCGGCCGTCAACTATCCGGCGCCGCTCGATCTGCGCGCGAACGCGCTGAAGGCG
ACGCGCGACGAGGTCATCGACAGCCTGCGCGCGGCGGGCATCGATGCCGGCGCGACGCCGTTCGCGCCGTTCGGCGTGCG
CGTCGTCGGCAAGCCGGCGCTCACGAAGCTCAAACTGTTCGAGGAAGGGCAGATCGAGGTGCAGGACGAGGGCAGCCAGC
TGCTGTGCTCGCTCGTCGCGCCGCGGCGCGGCGAGATGGTCGTCGATTTCTGCGCGGGCGCGGGCGGCAAGACGCTCGCG
CTCGGCGCGATGATGCGCTCGACGGGGCGCCTGTACGCGTTCGACGTGTCCGAGAAGCGGCTCGCGAAGCTCAAGCCGCG
CCTTGCGCGCAGCGGCCTGTCGAACGTGAACCCGGTGCTGATCGACAGCGAGCACGACGCGAAGATCAAGCGGCTCGCGG
GCAAGATCGACCGCGTGCTCGTCGACGCGCCGTGCAGCGGCCTCGGCACGCTGCGCCGCAATCCCGACCTGAAGTGGCGC
CAGTCGCGCGAGACGGTTGACGAGCTCGCGCCGAAGCAGGCGTCGATCCTCGCGAGCGCCGCGCGACTCGTGAAGAAGGG
CGGCCGGCTCGTCTACGCGACCTGCAGCGTGCTCGAGGCGGAGAACGAGGCGATCGTGTCCGAATTCCTCGCCGCGCATC
CGGAGTTCGCGCTGGTGCCGGCGAGCCGCGTGCTCGCCGAGCAGCGGATTGCGCTCGACACGGGCGACTATCTGTCGCTC
TGGCCGCATCGCCACGCGACCGACGGCTTCTTCGCCGCGGTGCTCGAGCGGCGCGCGCAGTAA

Upstream 100 bases:

>100_bases
AAGGGAAGCTGCGTCTCGACGCGGGGCGCGCCGTCGTCGCGCCCAACGAGGCGCGCTGGCTGTTCGCGGATGCGATCGAC
ACGTCGACGAGCGAGGGCGT

Downstream 100 bases:

>100_bases
CGGGCGGGCTCGCGCATGGTCACGAATCACCTCACGCGACGGCTCGCGGCCGTCGCACACGACTTCGGCCAGCCGGCGAT
GATCTGGCAGGCGGTCGCGT

Product: NOL1/NOP2/sun family protein

Products: NA

Alternate protein names: rRNA (cytosine-C(5)-)-methyltransferase rsmB [H]

Number of amino acids: Translated: 420; Mature: 420

Protein sequence:

>420_residues
MKLHGFLIGQTEALLADVLKFAGPADVTTSRFFRAHPKLGHAERGVIAEAVFAVLRRKMEYAHLAESGTGAPARRLVLLG
LMQTVGRSAVKPFVSDAEWAWLDHVAKIDPASLPLRVRTNLPDWIHQALAERMGADELAQFAAAVNYPAPLDLRANALKA
TRDEVIDSLRAAGIDAGATPFAPFGVRVVGKPALTKLKLFEEGQIEVQDEGSQLLCSLVAPRRGEMVVDFCAGAGGKTLA
LGAMMRSTGRLYAFDVSEKRLAKLKPRLARSGLSNVNPVLIDSEHDAKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWR
QSRETVDELAPKQASILASAARLVKKGGRLVYATCSVLEAENEAIVSEFLAAHPEFALVPASRVLAEQRIALDTGDYLSL
WPHRHATDGFFAAVLERRAQ

Sequences:

>Translated_420_residues
MKLHGFLIGQTEALLADVLKFAGPADVTTSRFFRAHPKLGHAERGVIAEAVFAVLRRKMEYAHLAESGTGAPARRLVLLG
LMQTVGRSAVKPFVSDAEWAWLDHVAKIDPASLPLRVRTNLPDWIHQALAERMGADELAQFAAAVNYPAPLDLRANALKA
TRDEVIDSLRAAGIDAGATPFAPFGVRVVGKPALTKLKLFEEGQIEVQDEGSQLLCSLVAPRRGEMVVDFCAGAGGKTLA
LGAMMRSTGRLYAFDVSEKRLAKLKPRLARSGLSNVNPVLIDSEHDAKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWR
QSRETVDELAPKQASILASAARLVKKGGRLVYATCSVLEAENEAIVSEFLAAHPEFALVPASRVLAEQRIALDTGDYLSL
WPHRHATDGFFAAVLERRAQ
>Mature_420_residues
MKLHGFLIGQTEALLADVLKFAGPADVTTSRFFRAHPKLGHAERGVIAEAVFAVLRRKMEYAHLAESGTGAPARRLVLLG
LMQTVGRSAVKPFVSDAEWAWLDHVAKIDPASLPLRVRTNLPDWIHQALAERMGADELAQFAAAVNYPAPLDLRANALKA
TRDEVIDSLRAAGIDAGATPFAPFGVRVVGKPALTKLKLFEEGQIEVQDEGSQLLCSLVAPRRGEMVVDFCAGAGGKTLA
LGAMMRSTGRLYAFDVSEKRLAKLKPRLARSGLSNVNPVLIDSEHDAKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWR
QSRETVDELAPKQASILASAARLVKKGGRLVYATCSVLEAENEAIVSEFLAAHPEFALVPASRVLAEQRIALDTGDYLSL
WPHRHATDGFFAAVLERRAQ

Specific function: Unknown

COG id: COG0144

COG function: function code J; tRNA and rRNA cytosine-C5-methylases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmB/NOP family [H]

Homologues:

Organism=Homo sapiens, GI76150625, Length=320, Percent_Identity=29.375, Blast_Score=121, Evalue=1e-27,
Organism=Homo sapiens, GI76150623, Length=320, Percent_Identity=29.375, Blast_Score=121, Evalue=1e-27,
Organism=Homo sapiens, GI270288818, Length=295, Percent_Identity=29.8305084745763, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI8922322, Length=295, Percent_Identity=29.8305084745763, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI23199998, Length=295, Percent_Identity=29.8305084745763, Blast_Score=97, Evalue=3e-20,
Organism=Homo sapiens, GI270288816, Length=295, Percent_Identity=29.8305084745763, Blast_Score=97, Evalue=3e-20,
Organism=Homo sapiens, GI32698918, Length=184, Percent_Identity=31.5217391304348, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI301336155, Length=354, Percent_Identity=25.7062146892655, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI39995082, Length=377, Percent_Identity=24.4031830238727, Blast_Score=79, Evalue=9e-15,
Organism=Homo sapiens, GI40316918, Length=189, Percent_Identity=32.8042328042328, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI11545785, Length=163, Percent_Identity=33.7423312883436, Blast_Score=69, Evalue=1e-11,
Organism=Escherichia coli, GI2367212, Length=259, Percent_Identity=32.4324324324324, Blast_Score=129, Evalue=4e-31,
Organism=Escherichia coli, GI87081985, Length=304, Percent_Identity=27.6315789473684, Blast_Score=101, Evalue=7e-23,
Organism=Caenorhabditis elegans, GI17536757, Length=295, Percent_Identity=29.8305084745763, Blast_Score=117, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI115534021, Length=226, Percent_Identity=32.3008849557522, Blast_Score=91, Evalue=8e-19,
Organism=Caenorhabditis elegans, GI71998419, Length=226, Percent_Identity=32.3008849557522, Blast_Score=90, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI25143471, Length=306, Percent_Identity=28.1045751633987, Blast_Score=81, Evalue=8e-16,
Organism=Saccharomyces cerevisiae, GI6324268, Length=306, Percent_Identity=26.797385620915, Blast_Score=111, Evalue=2e-25,
Organism=Saccharomyces cerevisiae, GI6319447, Length=182, Percent_Identity=34.0659340659341, Blast_Score=77, Evalue=4e-15,
Organism=Drosophila melanogaster, GI22024126, Length=314, Percent_Identity=26.4331210191083, Blast_Score=109, Evalue=4e-24,
Organism=Drosophila melanogaster, GI21356579, Length=221, Percent_Identity=28.0542986425339, Blast_Score=88, Evalue=1e-17,
Organism=Drosophila melanogaster, GI21355201, Length=285, Percent_Identity=27.3684210526316, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI21356513, Length=208, Percent_Identity=30.7692307692308, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24668781, Length=208, Percent_Identity=30.7692307692308, Blast_Score=77, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001678
- InterPro:   IPR018314
- InterPro:   IPR006027
- InterPro:   IPR004573 [H]

Pfam domain/function: PF01189 Nol1_Nop2_Fmu; PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 45550; Mature: 45550

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLHGFLIGQTEALLADVLKFAGPADVTTSRFFRAHPKLGHAERGVIAEAVFAVLRRKME
CCEEEEEECCHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
YAHLAESGTGAPARRLVLLGLMQTVGRSAVKPFVSDAEWAWLDHVAKIDPASLPLRVRTN
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCEEEECC
LPDWIHQALAERMGADELAQFAAAVNYPAPLDLRANALKATRDEVIDSLRAAGIDAGATP
CHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
FAPFGVRVVGKPALTKLKLFEEGQIEVQDEGSQLLCSLVAPRRGEMVVDFCAGAGGKTLA
CCCCCEEEECCCCHHHEEEECCCCEEEECCHHHHHHHHHCCCCCCEEEEEECCCCCCHHH
LGAMMRSTGRLYAFDVSEKRLAKLKPRLARSGLSNVNPVLIDSEHDAKIKRLAGKIDRVL
HHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHEE
VDAPCSGLGTLRRNPDLKWRQSRETVDELAPKQASILASAARLVKKGGRLVYATCSVLEA
EECCCCCCHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEEEEEEHHHHC
ENEAIVSEFLAAHPEFALVPASRVLAEQRIALDTGDYLSLWPHRHATDGFFAAVLERRAQ
CHHHHHHHHHHCCCCEEECCHHHHHHHHHHHCCCCCCCEECCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MKLHGFLIGQTEALLADVLKFAGPADVTTSRFFRAHPKLGHAERGVIAEAVFAVLRRKME
CCEEEEEECCHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
YAHLAESGTGAPARRLVLLGLMQTVGRSAVKPFVSDAEWAWLDHVAKIDPASLPLRVRTN
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCEEEECC
LPDWIHQALAERMGADELAQFAAAVNYPAPLDLRANALKATRDEVIDSLRAAGIDAGATP
CHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
FAPFGVRVVGKPALTKLKLFEEGQIEVQDEGSQLLCSLVAPRRGEMVVDFCAGAGGKTLA
CCCCCEEEECCCCHHHEEEECCCCEEEECCHHHHHHHHHCCCCCCEEEEEECCCCCCHHH
LGAMMRSTGRLYAFDVSEKRLAKLKPRLARSGLSNVNPVLIDSEHDAKIKRLAGKIDRVL
HHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHEE
VDAPCSGLGTLRRNPDLKWRQSRETVDELAPKQASILASAARLVKKGGRLVYATCSVLEA
EECCCCCCHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEEEEEEHHHHC
ENEAIVSEFLAAHPEFALVPASRVLAEQRIALDTGDYLSLWPHRHATDGFFAAVLERRAQ
CHHHHHHHHHHCCCCEEECCHHHHHHHHHHHCCCCCCCEECCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]