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The map label for this gene is pilC [H]

Identifier: 83719565

GI number: 83719565

Start: 1281284

End: 1282501

Strand: Reverse

Name: pilC [H]

Synonym: BTH_I1135

Alternate gene names: 83719565

Gene position: 1282501-1281284 (Counterclockwise)

Preceding gene: 83719679

Following gene: 83718694

Centisome position: 33.67

GC content: 71.59

Gene sequence:

>1218_bases
ATGAGCCCGCATAGTCCGGCCGCGCCGCTCGAGGCCCGGTATCGTTGGACGGGCGTGACGACCGACGGCGTGCGCCGCCG
CGGCATGCTGGTCGCCGTCAATCCGTCCGCCGCACGCGCGGCGCTCAAGCGCATCGGCGTCACCGTGCTGCACATCGAAG
CCCGTGGCAACGCGCCGCAGCCCACCGCACGGGCCGGCGAGGTCACGCGTTTCGCACGGCAGCTCGCGGGACTCTTGCAT
GCGGGGCTCGCGCTTGCGCCGTCGCTCGAACTGCTCGCGCAAGCGACGCGCCGAAACGAAATGCCACGCATCGCGGCAGG
CCTCGCACGCGAGATCGTTGCGGGACGGCAGTTCTCCGCCGCGCTGCGCCGCTACCCGCGCCAGTTCGATCCGTTTTTCT
GCCAACTGGTCGCGGTCGGCGAGACGGCGGGCGCGCTCGCCGCCGTGCTCGCCCGGCTCGCCGACGATCGCGAGCGTGCA
GCAGCACAATATGCCCGCGTCAGGGGGGCGCTCGCTTACCCGGTCGCCGTGCTGCTGGTCGCGCTCGCGATCACTGCGGC
ATTACTGATCTGGGTCGTGCCGACGTTCGAGCAGATCTTCGCGGGCTTCGGCGCTGCACTGCCCGCGCCGACCCGTTTCG
TCCTCGCGCTGTCGGCCGGCGTGACGCGCTGGAGCGCGCCTGTCGCCGCAGCCATGCTACTCGCCGGCGTTGCCGCTCGT
CGCGCGGTGCGCCGCTCCGCGATCGCACGCGTCGCGCTCGCGCAGGCGCTGCTACGCGCGCCATTCGCCGGGCCGCTCGT
GCAGGCGCTCGCCGCCGCCCGATGGAGCCGCGCGCTCGGCACGCTGCTCGCCGCCGGCACGCCGCTCACCGACGCATTCA
CCGCACTGTCGAACGCGACCGGCAACCCACGCTTCGATCTCGCGACAGCCCGCATCGCCGCACGTCTGCAGCACGGCGAG
CGGCTCGCCAGCGCGATGCGCGCAGAAGACTGCTTTGCCGACGATCTCGTCCAGCCGATCGCCGTCGCCGAGGAATCGGG
CACGCTGGACACGATGCTCATCGACGTCGCGACGCTCTACGATCGCCGCGTCGACGAACAGATCGGCGCGCTCGCGAACC
TGTGCGAACCCGTCGTGATCGTCGTGCTGGGCGCGCTGATCGGCGCACTCGTCGTCGCGATGTACTTGCCGATCGTCCAG
CTCGGCAACGTGGTGTAG

Upstream 100 bases:

>100_bases
CATGCGCCGAAGGCATGACGAGCCTACGCGATGCTGCGCTTGCCCGCGTTCGCGACGGCACGACGAGCTTGAGCGAAGCG
CTCGGCGCAACGGAGGCCCC

Downstream 100 bases:

>100_bases
CATCGCAGCCGAATCCGACTCCATTTGCGATGCCAACCGCCTCGATGACGCCCAATCCGTTCCTTCCCGGCCCGCCCGAG
CACGCGGCAGCAACCGGGCC

Product: type IV pilus biogenesis protein PilC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 404

Protein sequence:

>405_residues
MSPHSPAAPLEARYRWTGVTTDGVRRRGMLVAVNPSAARAALKRIGVTVLHIEARGNAPQPTARAGEVTRFARQLAGLLH
AGLALAPSLELLAQATRRNEMPRIAAGLAREIVAGRQFSAALRRYPRQFDPFFCQLVAVGETAGALAAVLARLADDRERA
AAQYARVRGALAYPVAVLLVALAITAALLIWVVPTFEQIFAGFGAALPAPTRFVLALSAGVTRWSAPVAAAMLLAGVAAR
RAVRRSAIARVALAQALLRAPFAGPLVQALAAARWSRALGTLLAAGTPLTDAFTALSNATGNPRFDLATARIAARLQHGE
RLASAMRAEDCFADDLVQPIAVAEESGTLDTMLIDVATLYDRRVDEQIGALANLCEPVVIVVLGALIGALVVAMYLPIVQ
LGNVV

Sequences:

>Translated_405_residues
MSPHSPAAPLEARYRWTGVTTDGVRRRGMLVAVNPSAARAALKRIGVTVLHIEARGNAPQPTARAGEVTRFARQLAGLLH
AGLALAPSLELLAQATRRNEMPRIAAGLAREIVAGRQFSAALRRYPRQFDPFFCQLVAVGETAGALAAVLARLADDRERA
AAQYARVRGALAYPVAVLLVALAITAALLIWVVPTFEQIFAGFGAALPAPTRFVLALSAGVTRWSAPVAAAMLLAGVAAR
RAVRRSAIARVALAQALLRAPFAGPLVQALAAARWSRALGTLLAAGTPLTDAFTALSNATGNPRFDLATARIAARLQHGE
RLASAMRAEDCFADDLVQPIAVAEESGTLDTMLIDVATLYDRRVDEQIGALANLCEPVVIVVLGALIGALVVAMYLPIVQ
LGNVV
>Mature_404_residues
SPHSPAAPLEARYRWTGVTTDGVRRRGMLVAVNPSAARAALKRIGVTVLHIEARGNAPQPTARAGEVTRFARQLAGLLHA
GLALAPSLELLAQATRRNEMPRIAAGLAREIVAGRQFSAALRRYPRQFDPFFCQLVAVGETAGALAAVLARLADDRERAA
AQYARVRGALAYPVAVLLVALAITAALLIWVVPTFEQIFAGFGAALPAPTRFVLALSAGVTRWSAPVAAAMLLAGVAARR
AVRRSAIARVALAQALLRAPFAGPLVQALAAARWSRALGTLLAAGTPLTDAFTALSNATGNPRFDLATARIAARLQHGER
LASAMRAEDCFADDLVQPIAVAEESGTLDTMLIDVATLYDRRVDEQIGALANLCEPVVIVVLGALIGALVVAMYLPIVQL
GNVV

Specific function: Involved in the translocation of the type IV pilin (pilA) [H]

COG id: COG1459

COG function: function code NU; Type II secretory pathway, component PulF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP F family [H]

Homologues:

Organism=Escherichia coli, GI1789724, Length=397, Percent_Identity=27.7078085642317, Blast_Score=155, Evalue=3e-39,
Organism=Escherichia coli, GI1786295, Length=394, Percent_Identity=29.6954314720812, Blast_Score=140, Evalue=1e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003004
- InterPro:   IPR018076
- InterPro:   IPR001992 [H]

Pfam domain/function: PF00482 GSPII_F [H]

EC number: NA

Molecular weight: Translated: 42594; Mature: 42463

Theoretical pI: Translated: 11.46; Mature: 11.46

Prosite motif: PS00874 T2SP_F

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPHSPAAPLEARYRWTGVTTDGVRRRGMLVAVNPSAARAALKRIGVTVLHIEARGNAPQ
CCCCCCCCCCCCCEEEECCCHHHHHHCCEEEEECCHHHHHHHHHHCEEEEEEEECCCCCC
PTARAGEVTRFARQLAGLLHAGLALAPSLELLAQATRRNEMPRIAAGLAREIVAGRQFSA
CCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCHHHHH
ALRRYPRQFDPFFCQLVAVGETAGALAAVLARLADDRERAAAQYARVRGALAYPVAVLLV
HHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALAITAALLIWVVPTFEQIFAGFGAALPAPTRFVLALSAGVTRWSAPVAAAMLLAGVAAR
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
RAVRRSAIARVALAQALLRAPFAGPLVQALAAARWSRALGTLLAAGTPLTDAFTALSNAT
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC
GNPRFDLATARIAARLQHGERLASAMRAEDCFADDLVQPIAVAEESGTLDTMLIDVATLY
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
DRRVDEQIGALANLCEPVVIVVLGALIGALVVAMYLPIVQLGNVV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SPHSPAAPLEARYRWTGVTTDGVRRRGMLVAVNPSAARAALKRIGVTVLHIEARGNAPQ
CCCCCCCCCCCCEEEECCCHHHHHHCCEEEEECCHHHHHHHHHHCEEEEEEEECCCCCC
PTARAGEVTRFARQLAGLLHAGLALAPSLELLAQATRRNEMPRIAAGLAREIVAGRQFSA
CCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCHHHHH
ALRRYPRQFDPFFCQLVAVGETAGALAAVLARLADDRERAAAQYARVRGALAYPVAVLLV
HHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALAITAALLIWVVPTFEQIFAGFGAALPAPTRFVLALSAGVTRWSAPVAAAMLLAGVAAR
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
RAVRRSAIARVALAQALLRAPFAGPLVQALAAARWSRALGTLLAAGTPLTDAFTALSNAT
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC
GNPRFDLATARIAARLQHGERLASAMRAEDCFADDLVQPIAVAEESGTLDTMLIDVATLY
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
DRRVDEQIGALANLCEPVVIVVLGALIGALVVAMYLPIVQLGNVV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1971619; 10984043 [H]