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The map label for this gene is yidD [C]

Identifier: 83594667

GI number: 83594667

Start: 3850149

End: 3850496

Strand: Direct

Name: yidD [C]

Synonym: Rru_A3338

Alternate gene names: 83594667

Gene position: 3850149-3850496 (Clockwise)

Preceding gene: 83594666

Following gene: 83594668

Centisome position: 88.45

GC content: 68.97

Gene sequence:

>348_bases
GTGAGGCCTTTGGCCGCCCTGTCCCAGGGGATCGGCCTGCTGATGCGCGGGCTGATCTGGCTTTACCGCCTGTTTCTGTC
GCCGCTGCTCGGCCAGAACTGCCGGTTCGATCCCTCGTGCAGCCGCTATGCCCTGGAAGCGATCACCCGCCACGGTCCTT
TCTGGGGGCTGTGGCTGGCGGTGCGCAGGATTTCGCGTTGCCATCCGTGGGGAGGCATGGGATACGATCCCGTCCCTGAC
GACCCCCGGCCGGGCCGGTGCGGCTGCAAGGACGCCGGACCAGCCGTGAGCGCCGGATCGACCGAGGGCAACCCCGGTCG
GCGGACCGACGGGACAGATCCGGATTAG

Upstream 100 bases:

>100_bases
ATGATTACGTGGTGATCGGTCGCGCCGCCACCCTTGGACGCCCCTTCGATCTGCTGGTCGCCGATCTGCGCGCCGCTCTT
AAGCGCTTAGGGATGCGCCG

Downstream 100 bases:

>100_bases
ACCCTCGCCGACTGCCCGACGTGCCCTCCTCAGCTGGGCCGAACGGCGCACAACTGCTGAAGTGGGAAGGCAGAGTAATG
CTGCAACAGCGTAACCTTAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 115; Mature: 115

Protein sequence:

>115_residues
MRPLAALSQGIGLLMRGLIWLYRLFLSPLLGQNCRFDPSCSRYALEAITRHGPFWGLWLAVRRISRCHPWGGMGYDPVPD
DPRPGRCGCKDAGPAVSAGSTEGNPGRRTDGTDPD

Sequences:

>Translated_115_residues
MRPLAALSQGIGLLMRGLIWLYRLFLSPLLGQNCRFDPSCSRYALEAITRHGPFWGLWLAVRRISRCHPWGGMGYDPVPD
DPRPGRCGCKDAGPAVSAGSTEGNPGRRTDGTDPD
>Mature_115_residues
MRPLAALSQGIGLLMRGLIWLYRLFLSPLLGQNCRFDPSCSRYALEAITRHGPFWGLWLAVRRISRCHPWGGMGYDPVPD
DPRPGRCGCKDAGPAVSAGSTEGNPGRRTDGTDPD

Specific function: Unknown

COG id: COG0759

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0161 family

Homologues:

Organism=Escherichia coli, GI87082322, Length=76, Percent_Identity=48.6842105263158, Blast_Score=72, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y3338_RHORT (Q2RP13)

Other databases:

- EMBL:   CP000230
- RefSeq:   YP_428419.1
- STRING:   Q2RP13
- GeneID:   3836790
- GenomeReviews:   CP000230_GR
- KEGG:   rru:Rru_A3338
- NMPDR:   fig|1085.1.peg.2157
- eggNOG:   COG0759
- HOGENOM:   HBG634291
- OMA:   ASTHAHQ
- BioCyc:   RRUB269796:RRU_A3338-MONOMER
- HAMAP:   MF_00386
- InterPro:   IPR002696
- ProDom:   PD004225
- TIGRFAMs:   TIGR00278

Pfam domain/function: PF01809 DUF37

EC number: NA

Molecular weight: Translated: 12582; Mature: 12582

Theoretical pI: Translated: 8.78; Mature: 8.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
4.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
7.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPLAALSQGIGLLMRGLIWLYRLFLSPLLGQNCRFDPSCSRYALEAITRHGPFWGLWLA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHH
VRRISRCHPWGGMGYDPVPDDPRPGRCGCKDAGPAVSAGSTEGNPGRRTDGTDPD
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRPLAALSQGIGLLMRGLIWLYRLFLSPLLGQNCRFDPSCSRYALEAITRHGPFWGLWLA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHH
VRRISRCHPWGGMGYDPVPDDPRPGRCGCKDAGPAVSAGSTEGNPGRRTDGTDPD
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA