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The map label for this gene is rnpA [H]

Identifier: 83594666

GI number: 83594666

Start: 3849628

End: 3850152

Strand: Direct

Name: rnpA [H]

Synonym: Rru_A3337

Alternate gene names: 83594666

Gene position: 3849628-3850152 (Clockwise)

Preceding gene: 83594665

Following gene: 83594667

Centisome position: 88.44

GC content: 70.86

Gene sequence:

>525_bases
ATGGGATCATGTCCGTCGGCCCCACCCGAGAACGCCCCACGGCGCGACGGGGAAAGCCAGCAGGACGATCCCGGCCACCC
CCTTTCGCCCGGTCCGCTCTCGGGGACCGAGTCGCAGGGACCCTCCCCGGGATCGCACAAGGATCGCAGCGCGCTTGCCG
TCGGCCGCCTTAAACAGCGGGCCGATTTTTTGCGCGTCGCCGGTAAGCGCTGTAAATGGGCCGCCCCCGGGCTGGTCCTT
CAGGCCGCCGTCCAGCCCGCCCCGCGGGCGGGACGCCACCCGGCCTTGCCCCTGCCGCCTCCGATCCGCGTCGGCTTCAC
CACCAGCAAAAAGGTGGGCAATGCCGTCGAGCGCAACCGCGCCCGGCGCCGCTTGCGCGCGGCCGTCGATCTGGTGATCG
CCACCGAGGCCAAGGGCGGCCATGATTACGTGGTGATCGGTCGCGCCGCCACCCTTGGACGCCCCTTCGATCTGCTGGTC
GCCGATCTGCGCGCCGCTCTTAAGCGCTTAGGGATGCGCCGGTGA

Upstream 100 bases:

>100_bases
GCCACCGTCGGCGGCCGTCGCGTTCTGGCCAACCGTCGGGCCAAGGGCCGCAAGCGCCTGTCGGCTTAAGGTTTCGTTTC
CCGCGCCCGGAGGTTCGGCC

Downstream 100 bases:

>100_bases
GGCCTTTGGCCGCCCTGTCCCAGGGGATCGGCCTGCTGATGCGCGGGCTGATCTGGCTTTACCGCCTGTTTCTGTCGCCG
CTGCTCGGCCAGAACTGCCG

Product: ribonuclease P protein

Products: NA

Alternate protein names: RNase P protein; RNaseP protein; Protein C5 [H]

Number of amino acids: Translated: 174; Mature: 173

Protein sequence:

>174_residues
MGSCPSAPPENAPRRDGESQQDDPGHPLSPGPLSGTESQGPSPGSHKDRSALAVGRLKQRADFLRVAGKRCKWAAPGLVL
QAAVQPAPRAGRHPALPLPPPIRVGFTTSKKVGNAVERNRARRRLRAAVDLVIATEAKGGHDYVVIGRAATLGRPFDLLV
ADLRAALKRLGMRR

Sequences:

>Translated_174_residues
MGSCPSAPPENAPRRDGESQQDDPGHPLSPGPLSGTESQGPSPGSHKDRSALAVGRLKQRADFLRVAGKRCKWAAPGLVL
QAAVQPAPRAGRHPALPLPPPIRVGFTTSKKVGNAVERNRARRRLRAAVDLVIATEAKGGHDYVVIGRAATLGRPFDLLV
ADLRAALKRLGMRR
>Mature_173_residues
GSCPSAPPENAPRRDGESQQDDPGHPLSPGPLSGTESQGPSPGSHKDRSALAVGRLKQRADFLRVAGKRCKWAAPGLVLQ
AAVQPAPRAGRHPALPLPPPIRVGFTTSKKVGNAVERNRARRRLRAAVDLVIATEAKGGHDYVVIGRAATLGRPFDLLVA
DLRAALKRLGMRR

Specific function: RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-lead

COG id: COG0594

COG function: function code J; RNase P protein component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rnpA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020568
- InterPro:   IPR014721
- InterPro:   IPR000100
- ProDom:   PD003629 [H]

Pfam domain/function: PF00825 Ribonuclease_P [H]

EC number: =3.1.26.5 [H]

Molecular weight: Translated: 18488; Mature: 18356

Theoretical pI: Translated: 11.92; Mature: 11.92

Prosite motif: PS00648 RIBONUCLEASE_P

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSCPSAPPENAPRRDGESQQDDPGHPLSPGPLSGTESQGPSPGSHKDRSALAVGRLKQR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
ADFLRVAGKRCKWAAPGLVLQAAVQPAPRAGRHPALPLPPPIRVGFTTSKKVGNAVERNR
HHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHH
ARRRLRAAVDLVIATEAKGGHDYVVIGRAATLGRPFDLLVADLRAALKRLGMRR
HHHHHHHHHHHHEEECCCCCCCEEEEECHHHCCCCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
GSCPSAPPENAPRRDGESQQDDPGHPLSPGPLSGTESQGPSPGSHKDRSALAVGRLKQR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
ADFLRVAGKRCKWAAPGLVLQAAVQPAPRAGRHPALPLPPPIRVGFTTSKKVGNAVERNR
HHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHH
ARRRLRAAVDLVIATEAKGGHDYVVIGRAATLGRPFDLLVADLRAALKRLGMRR
HHHHHHHHHHHHEEECCCCCCCEEEEECHHHCCCCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA