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The map label for this gene is yihW [H]

Identifier: 83594340

GI number: 83594340

Start: 3467521

End: 3468315

Strand: Reverse

Name: yihW [H]

Synonym: Rru_A3010

Alternate gene names: 83594340

Gene position: 3468315-3467521 (Counterclockwise)

Preceding gene: 83594342

Following gene: 83594338

Centisome position: 79.68

GC content: 68.3

Gene sequence:

>795_bases
ATGAGCGATAACGGCGCCTCCCCGGCGGGGTCGGGCAAGCTGTCGAAGGCCGGGCGCCAGGAGCGGATCGTGGCCGAGCT
GCGGGCGGGACCGACCCTGCGGGTATCGGAGCTGGCGACCACCCTGGGCGTGTCGACCGAGACCATCCGCCGCGATCTCG
ACGAGTTGGAGGCGCGCGGCCTGATCAACCGCACCTATGGCGGGGCGGTCCGCCCCTTTGGCCCCGAGCCGACCATCCGC
GAGCGCCATCAGATGCTGGTCAGCGAACGCGAGATCATCGCCGCCGCCGCCGCCCGCACCATCAGCCATGGCGATGTGCT
GATCATCGGCGGCGGCGCCACCACCACCCATGTCGCCCGCCGGCTGGCCGCCGAGAAGCGCGATCTGAAGGTGTTCACCG
ATTCCTTCGCCGTCGCCACCGTGCTCGCCCCCAATCCCACCGTCGAGGTGTTCTTGTGTCCCGGCCGCTACAACGGCCAG
GAGGGCTGCGTCTCGGGGGCCGAGACCATCGATTACATCGGCAAGATCTATGCCAATCACGCCATTTTGGGGGCCACCGG
TCTGACCGAGGACGGCCCCAATGACGCCGATATCGACGCCGCCGCCACCTATCGCGCCATGGCCTTGCGGGCGACCGATG
TCACCGTCGTCGCCGATCACACCAAATTCGATCGGGCGGCGATTTCGGTCTATTGCCGCTGGCCGGTGATCAGCCGCTTG
GTCACCGATCAGCGGCCCGAAGGCGCTCTGCGGTTGATCCTCGAGCGCGCCGGGGTCGAGGTCATCGTTCCCTGA

Upstream 100 bases:

>100_bases
TCCAGAAGAGTGGACTTCCCACAGAATAGCGAATTTCCGTGACCGAGTTGCCTCTATTATTGTAGGAAGATCAACATTTT
GAGGCGTAAAGGAGTGGATG

Downstream 100 bases:

>100_bases
GCGGCCGGGCTCAGGGCGCGATCTCGGTCAATACCTCTTCGAGCGCCGCGCCCAGGATATCGACCTGATCGCGGGTGAAG
CACAGCGGCGGGCGGACTTT

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 263

Protein sequence:

>264_residues
MSDNGASPAGSGKLSKAGRQERIVAELRAGPTLRVSELATTLGVSTETIRRDLDELEARGLINRTYGGAVRPFGPEPTIR
ERHQMLVSEREIIAAAAARTISHGDVLIIGGGATTTHVARRLAAEKRDLKVFTDSFAVATVLAPNPTVEVFLCPGRYNGQ
EGCVSGAETIDYIGKIYANHAILGATGLTEDGPNDADIDAAATYRAMALRATDVTVVADHTKFDRAAISVYCRWPVISRL
VTDQRPEGALRLILERAGVEVIVP

Sequences:

>Translated_264_residues
MSDNGASPAGSGKLSKAGRQERIVAELRAGPTLRVSELATTLGVSTETIRRDLDELEARGLINRTYGGAVRPFGPEPTIR
ERHQMLVSEREIIAAAAARTISHGDVLIIGGGATTTHVARRLAAEKRDLKVFTDSFAVATVLAPNPTVEVFLCPGRYNGQ
EGCVSGAETIDYIGKIYANHAILGATGLTEDGPNDADIDAAATYRAMALRATDVTVVADHTKFDRAAISVYCRWPVISRL
VTDQRPEGALRLILERAGVEVIVP
>Mature_263_residues
SDNGASPAGSGKLSKAGRQERIVAELRAGPTLRVSELATTLGVSTETIRRDLDELEARGLINRTYGGAVRPFGPEPTIRE
RHQMLVSEREIIAAAAARTISHGDVLIIGGGATTTHVARRLAAEKRDLKVFTDSFAVATVLAPNPTVEVFLCPGRYNGQE
GCVSGAETIDYIGKIYANHAILGATGLTEDGPNDADIDAAATYRAMALRATDVTVVADHTKFDRAAISVYCRWPVISRLV
TDQRPEGALRLILERAGVEVIVP

Specific function: Unknown

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082344, Length=254, Percent_Identity=29.5275590551181, Blast_Score=111, Evalue=4e-26,
Organism=Escherichia coli, GI1789829, Length=250, Percent_Identity=28.4, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1789519, Length=252, Percent_Identity=29.7619047619048, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1789059, Length=247, Percent_Identity=27.1255060728745, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1788069, Length=216, Percent_Identity=28.2407407407407, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1787540, Length=249, Percent_Identity=26.9076305220884, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1789170, Length=238, Percent_Identity=26.4705882352941, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1790635, Length=256, Percent_Identity=23.046875, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI226510968, Length=239, Percent_Identity=23.8493723849372, Blast_Score=64, Evalue=7e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 28186; Mature: 28055

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDNGASPAGSGKLSKAGRQERIVAELRAGPTLRVSELATTLGVSTETIRRDLDELEARG
CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEHHHHHHHHCCCHHHHHHHHHHHHHCC
LINRTYGGAVRPFGPEPTIRERHQMLVSEREIIAAAAARTISHGDVLIIGGGATTTHVAR
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHH
RLAAEKRDLKVFTDSFAVATVLAPNPTVEVFLCPGRYNGQEGCVSGAETIDYIGKIYANH
HHHHHHCCCEEEECCEEEEEEECCCCCEEEEECCCCCCCHHHHCCHHHHHHHHHHHHHCC
AILGATGLTEDGPNDADIDAAATYRAMALRATDVTVVADHTKFDRAAISVYCRWPVISRL
EEEECCCCCCCCCCCCCCCHHHHHHHEEEEECCEEEEECCCCCCCEEEEEEECCHHHHHH
VTDQRPEGALRLILERAGVEVIVP
HHCCCCCHHHHHHHHHCCEEEECC
>Mature Secondary Structure 
SDNGASPAGSGKLSKAGRQERIVAELRAGPTLRVSELATTLGVSTETIRRDLDELEARG
CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEHHHHHHHHCCCHHHHHHHHHHHHHCC
LINRTYGGAVRPFGPEPTIRERHQMLVSEREIIAAAAARTISHGDVLIIGGGATTTHVAR
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHH
RLAAEKRDLKVFTDSFAVATVLAPNPTVEVFLCPGRYNGQEGCVSGAETIDYIGKIYANH
HHHHHHCCCEEEECCEEEEEEECCCCCEEEEECCCCCCCHHHHCCHHHHHHHHHHHHHCC
AILGATGLTEDGPNDADIDAAATYRAMALRATDVTVVADHTKFDRAAISVYCRWPVISRL
EEEECCCCCCCCCCCCCCCHHHHHHHEEEEECCEEEEECCCCCCCEEEEEEECCHHHHHH
VTDQRPEGALRLILERAGVEVIVP
HHCCCCCHHHHHHHHHCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8346018; 9278503 [H]