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The map label for this gene is potC [H]

Identifier: 83594342

GI number: 83594342

Start: 3469158

End: 3469961

Strand: Reverse

Name: potC [H]

Synonym: Rru_A3012

Alternate gene names: 83594342

Gene position: 3469961-3469158 (Counterclockwise)

Preceding gene: 83594343

Following gene: 83594340

Centisome position: 79.72

GC content: 63.31

Gene sequence:

>804_bases
ATGGATATCAATCAAACCGACCGCCGCAATCGCGGGCTGCTCTGGGGCTGGACGCTGTTCGTGCTGGTGGTCTTGTATCT
GCCGGTGGTGTGCAGCGCCTTGGCTTCGCTGTCGAAATCGCGCTACTTCCTGTTTCCGATCCGCCAGTGGTCGGGGGAAT
GGTGGCAGAAAACCACCGCGTCGATCGAAATCGGCATGCTGGTCAATACCTCGCTGATGCTGGCGGCGGTGGTAACGGCG
ATCAGCGTCGTTCTGGCCTTTTTCGGCGCCATGGCCTTCGCCCGCTATGACTGGTCGGGGCGGCGTTTGTTCCAAAAGGC
GGTGCTTTTGCCGATCTTCTTTCCCCAGCCGGTGCTGGGTCTGGCCCTGCTGTTGTGGTTCAACGCCATCGGCGTGCCGC
TGTCATGGCATACGGCGGTGCTGGCCCATCTGGTGTGGATCACCCCGGTGGTCACCCTGGTGATCGCCATCCAGGTCTAT
GGCTTCGATCCGACCGTCGAGGATGCCGCCTTCGACCTGGGGGCCAACCGCTGGCAGGTGCTGACCGAGATCACCTTGCC
GATCCTGTGGCCGGGCATCTGGTCGGGCATGTTGTTCGCCTTCTTGCTGTCGTGGGGCAATTTCCCGCTGTCGCTCTATA
CGGCGGGGGCGGACGCCACCGTGCCCGAATGGCTTTATAACAAGATGGTCGCCGGCTATACGCCGATGGTGCCGACCCTG
GGCACCATGAGCACCCTGGCCGCCGCCGGCGCCCTGATCCTGGGCGGCTTGGTGATGCGCCTTGTCCAGAAGCGGCGCGC
CTGA

Upstream 100 bases:

>100_bases
TGGCGGTGCTGCTGACCCTGATCATCGGCGGCTTGACGCTGTTTGCCCTGTCCAAGCTCGATCTCGACCGCATTCTTGGG
CGCAAGTGAGGATTCCGGCC

Downstream 100 bases:

>100_bases
CCGGGCGCGCCCTTCCGTCCGTGGTTACGGCAGATAGCCCAGGACATCGTCGGCGGTCATCACCGCGCAATAGATGCGGT
TGATGATCGCCAGTTCCTGG

Product: binding-protein dependent transport system inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MDINQTDRRNRGLLWGWTLFVLVVLYLPVVCSALASLSKSRYFLFPIRQWSGEWWQKTTASIEIGMLVNTSLMLAAVVTA
ISVVLAFFGAMAFARYDWSGRRLFQKAVLLPIFFPQPVLGLALLLWFNAIGVPLSWHTAVLAHLVWITPVVTLVIAIQVY
GFDPTVEDAAFDLGANRWQVLTEITLPILWPGIWSGMLFAFLLSWGNFPLSLYTAGADATVPEWLYNKMVAGYTPMVPTL
GTMSTLAAAGALILGGLVMRLVQKRRA

Sequences:

>Translated_267_residues
MDINQTDRRNRGLLWGWTLFVLVVLYLPVVCSALASLSKSRYFLFPIRQWSGEWWQKTTASIEIGMLVNTSLMLAAVVTA
ISVVLAFFGAMAFARYDWSGRRLFQKAVLLPIFFPQPVLGLALLLWFNAIGVPLSWHTAVLAHLVWITPVVTLVIAIQVY
GFDPTVEDAAFDLGANRWQVLTEITLPILWPGIWSGMLFAFLLSWGNFPLSLYTAGADATVPEWLYNKMVAGYTPMVPTL
GTMSTLAAAGALILGGLVMRLVQKRRA
>Mature_267_residues
MDINQTDRRNRGLLWGWTLFVLVVLYLPVVCSALASLSKSRYFLFPIRQWSGEWWQKTTASIEIGMLVNTSLMLAAVVTA
ISVVLAFFGAMAFARYDWSGRRLFQKAVLLPIFFPQPVLGLALLLWFNAIGVPLSWHTAVLAHLVWITPVVTLVIAIQVY
GFDPTVEDAAFDLGANRWQVLTEITLPILWPGIWSGMLFAFLLSWGNFPLSLYTAGADATVPEWLYNKMVAGYTPMVPTL
GTMSTLAAAGALILGGLVMRLVQKRRA

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787714, Length=209, Percent_Identity=31.5789473684211, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787368, Length=212, Percent_Identity=24.0566037735849, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1787081, Length=240, Percent_Identity=29.5833333333333, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1786980, Length=113, Percent_Identity=37.1681415929204, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 29669; Mature: 29669

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]