| Definition | Rhodospirillum rubrum ATCC 11170 chromosome, complete genome. |
|---|---|
| Accession | NC_007643 |
| Length | 4,352,825 |
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The map label for this gene is 83594336
Identifier: 83594336
GI number: 83594336
Start: 3462645
End: 3464708
Strand: Reverse
Name: 83594336
Synonym: Rru_A3006
Alternate gene names: NA
Gene position: 3464708-3462645 (Counterclockwise)
Preceding gene: 83594338
Following gene: 83594334
Centisome position: 79.6
GC content: 65.99
Gene sequence:
>2064_bases ATGGACGACCACGACGTACCGTTATCCGTTCGCGCCGCCGATGACCGCGAAAACATCGGCGTCAATCCGACCTCGGGCGC GCGTTTTGATACGATGATGGCGGCGCGCGGTGTCGCGGCGAGCGATGCCCGCGAGAACCTTGGGGTCAATCCCTCGACCG AGCCGTCGATCGACGATCTGGTCGCCGCCCGTTTCGGCCGCCGCGCCGCCTTGAAGGGCCTCTCGGCCGCCGCCACCCTG GCGATGCTGGCCGGAACCGGCGCCGTCGGCGCCCTGTCGCCCCGCTCGGCCCGCGCCGCCACCCCTACGGGCGGATCGTC GCTGACCTTCAAGGAACTGCCCCACGGCTATGACGAAGATCACCATGTGGCCGAAGGCTATCAGGCCCAGGTGCTGATCC GCTGGGGCGACAAGGTTCTGCCCGGCGCCCCGGCCTTCGCTCCCCAGGCCCTGACCGCCGCCGCCCAATCGGCCCAATTC GGCTATAACAACGACTATGTCGGCTACTTCCCCCTGCCGCGCGGCTCGCAAAGCTCCGATCATGGGCTTTTGGCGGTCAA TCACGAATACACCGACCGCCAGTTGATGTTCCCGGGCATCGGCCCCGAGGATCAGGACAAGCAGACCAACGAGATGATCG ATGTCGAACTGGCCGCCCATGGTCACAGCGTCATCGAGATCAAGCGCGAGGGCGAGCGGTGGTCGGTGGTCGAGGACAGC CCCTATAACCGCCGCTTGACCGCCCTGGCGACGCCCTTCCTGGTCACCGGTCCGGCCGCCGGTCATGACCGCCTGAAGAC CAAGGCCGATCCGACGGGAACCCGGGTGATCGGCACGCTCAACAACTGCGCCGGCGGCACCACGCCCTGGGGCACGGTGT TGATCGCCGAGGAAAACGTCCACCAGTATTTCCGCGGCACCGGCGCGGCCACTGCCGAATCGGCCAATTACAAGCGCATG GGCATCACCGACAAGCCGGCCTATGACTGGGCCCGCTTTCACGATCGCTTCGATGTGTCCAAGGAGCTCAACGAAGCCAA TCGCTTCGGCTGGATGGTCGAATTCGATCCCTATGATCCGGCCTCGGTGCCCAAGAAGCGCACCGCCCTGGGACGCTTCA AGCACGAGGCGGCGACGACCATCCTCAATGCCGACGGCCGCTTGGCGGTCTATTGCGGCGACGATGAGGCCTTCGAGTAC GTTTATAAGTTCATCACCACCGGCAAGGTCGATCCCGCCAATCCGGCGGCCAATGCCGATCTTCTCGATGACGGGGTGTT GTTCGTTGGCAAGTTCAGCGCCGATGGCGCCCTGCGCTGGATCCCGCTGGTTCATGGCCAGGGGCCGTTGACCGCCGCCA ACGGCTTTAACAGCCAGGCCGATGTTCTGATCGAAGCCCGCCGGGCCGCCGATCTGCTGGGGGCGACGCCGATGGACCGC CCCGAGGATGTCGAGCCCAATCCGGTGACCGGCACGGTGTTCATGAACCTGACCAACAACACCAAGCGCAAGGATGATCG GATCGATGCCGCCAATCCCCGCGCCGGCAATGGTCATGGTCATGTGATCGAAATGATCCCGCCGGGCGAGCGCGGCAAGC GCGACCATGCCGCCAGCGAGTACACCTGGGATATCTTCCTGCTGGCGGGCAATCCGGCCAATCCCAAGGATGGTGCCCGC TATGGCGCCGGCGGTGTTAGCGAAAGCGGCTGGCTGTCGTGCCCCGACAACATGGCCTTCGACAACCAGGGGCGGATCTG GATCTCGACCGATGGCGCGCCCAAGGCCGGGATCGCCGATGGCATCTGGGCGGCCGATGTGGAAGGTCCGGGGCGGGCGG TCACCCGTCACTTCTACAGCGCGCCGCGCGGGGCCGAGATGTGCGGACCCTGCTTCACCCCCGATAACACCACCTTCTTC GTCGCCGTCCAGCATCCGGGCGACGAGGCCAAGGCCACCTATGAGAATCCGGTCACCCGCTGGCCCGATTTCAAGCCCGA TCTGCCGCCCCGGCCCTCGGTCGTCGCCATCACCCGCAAGGCCGGCGGCTTCATCGGCGTCTGA
Upstream 100 bases:
>100_bases TCCCGGTGGAAAATGACCTGAAACTTTAACGGGAAAAACAGACCCCGGCTTTCTATTCTCCCGCCGGACCCTTAGGCCTC GAATCTCCGGGAGAGTGATC
Downstream 100 bases:
>100_bases CCGGGGGCTAAAGACTCCCGACACCAGGAAAGGGGCGCTCCCGCAGGGGCGCCCCTTTCGCCGTTCGCGTCGGGGCGCGC CTAACGCTTGCTGGGGCGGA
Product: hypothetical protein
Products: NA
Alternate protein names: Phosphatase; Tat Pathway Signal Sequence Domain-Containing Protein; Tat Pathway Signal Sequence Domain Protein; Twin-Arginine Translocation Pathway Signal Protein; UxpB Protein; DTDP-Glucose 4 6-Dehydratase; Twin Arginine Translocation Pathway Signal Protein; Phosphatase-Like Protein; DTDP-D-Glucose 4 6-Dehydratase; Glutamate-Cysteine Ligase/Putative Amino Acid Ligase; Alkaline Phosphatase Family Protein; Exported Protein
Number of amino acids: Translated: 687; Mature: 687
Protein sequence:
>687_residues MDDHDVPLSVRAADDRENIGVNPTSGARFDTMMAARGVAASDARENLGVNPSTEPSIDDLVAARFGRRAALKGLSAAATL AMLAGTGAVGALSPRSARAATPTGGSSLTFKELPHGYDEDHHVAEGYQAQVLIRWGDKVLPGAPAFAPQALTAAAQSAQF GYNNDYVGYFPLPRGSQSSDHGLLAVNHEYTDRQLMFPGIGPEDQDKQTNEMIDVELAAHGHSVIEIKREGERWSVVEDS PYNRRLTALATPFLVTGPAAGHDRLKTKADPTGTRVIGTLNNCAGGTTPWGTVLIAEENVHQYFRGTGAATAESANYKRM GITDKPAYDWARFHDRFDVSKELNEANRFGWMVEFDPYDPASVPKKRTALGRFKHEAATTILNADGRLAVYCGDDEAFEY VYKFITTGKVDPANPAANADLLDDGVLFVGKFSADGALRWIPLVHGQGPLTAANGFNSQADVLIEARRAADLLGATPMDR PEDVEPNPVTGTVFMNLTNNTKRKDDRIDAANPRAGNGHGHVIEMIPPGERGKRDHAASEYTWDIFLLAGNPANPKDGAR YGAGGVSESGWLSCPDNMAFDNQGRIWISTDGAPKAGIADGIWAADVEGPGRAVTRHFYSAPRGAEMCGPCFTPDNTTFF VAVQHPGDEAKATYENPVTRWPDFKPDLPPRPSVVAITRKAGGFIGV
Sequences:
>Translated_687_residues MDDHDVPLSVRAADDRENIGVNPTSGARFDTMMAARGVAASDARENLGVNPSTEPSIDDLVAARFGRRAALKGLSAAATL AMLAGTGAVGALSPRSARAATPTGGSSLTFKELPHGYDEDHHVAEGYQAQVLIRWGDKVLPGAPAFAPQALTAAAQSAQF GYNNDYVGYFPLPRGSQSSDHGLLAVNHEYTDRQLMFPGIGPEDQDKQTNEMIDVELAAHGHSVIEIKREGERWSVVEDS PYNRRLTALATPFLVTGPAAGHDRLKTKADPTGTRVIGTLNNCAGGTTPWGTVLIAEENVHQYFRGTGAATAESANYKRM GITDKPAYDWARFHDRFDVSKELNEANRFGWMVEFDPYDPASVPKKRTALGRFKHEAATTILNADGRLAVYCGDDEAFEY VYKFITTGKVDPANPAANADLLDDGVLFVGKFSADGALRWIPLVHGQGPLTAANGFNSQADVLIEARRAADLLGATPMDR PEDVEPNPVTGTVFMNLTNNTKRKDDRIDAANPRAGNGHGHVIEMIPPGERGKRDHAASEYTWDIFLLAGNPANPKDGAR YGAGGVSESGWLSCPDNMAFDNQGRIWISTDGAPKAGIADGIWAADVEGPGRAVTRHFYSAPRGAEMCGPCFTPDNTTFF VAVQHPGDEAKATYENPVTRWPDFKPDLPPRPSVVAITRKAGGFIGV >Mature_687_residues MDDHDVPLSVRAADDRENIGVNPTSGARFDTMMAARGVAASDARENLGVNPSTEPSIDDLVAARFGRRAALKGLSAAATL AMLAGTGAVGALSPRSARAATPTGGSSLTFKELPHGYDEDHHVAEGYQAQVLIRWGDKVLPGAPAFAPQALTAAAQSAQF GYNNDYVGYFPLPRGSQSSDHGLLAVNHEYTDRQLMFPGIGPEDQDKQTNEMIDVELAAHGHSVIEIKREGERWSVVEDS PYNRRLTALATPFLVTGPAAGHDRLKTKADPTGTRVIGTLNNCAGGTTPWGTVLIAEENVHQYFRGTGAATAESANYKRM GITDKPAYDWARFHDRFDVSKELNEANRFGWMVEFDPYDPASVPKKRTALGRFKHEAATTILNADGRLAVYCGDDEAFEY VYKFITTGKVDPANPAANADLLDDGVLFVGKFSADGALRWIPLVHGQGPLTAANGFNSQADVLIEARRAADLLGATPMDR PEDVEPNPVTGTVFMNLTNNTKRKDDRIDAANPRAGNGHGHVIEMIPPGERGKRDHAASEYTWDIFLLAGNPANPKDGAR YGAGGVSESGWLSCPDNMAFDNQGRIWISTDGAPKAGIADGIWAADVEGPGRAVTRHFYSAPRGAEMCGPCFTPDNTTFF VAVQHPGDEAKATYENPVTRWPDFKPDLPPRPSVVAITRKAGGFIGV
Specific function: Unknown
COG id: COG3211
COG function: function code R; Predicted phosphatase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 73753; Mature: 73753
Theoretical pI: Translated: 5.40; Mature: 5.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDDHDVPLSVRAADDRENIGVNPTSGARFDTMMAARGVAASDARENLGVNPSTEPSIDDL CCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHCCCCCCCCCCHHHH VAARFGRRAALKGLSAAATLAMLAGTGAVGALSPRSARAATPTGGSSLTFKELPHGYDED HHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEHHHCCCCCCCC HHVAEGYQAQVLIRWGDKVLPGAPAFAPQALTAAAQSAQFGYNNDYVGYFPLPRGSQSSD CHHHCCCEEEEEEEECCEECCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCC HGLLAVNHEYTDRQLMFPGIGPEDQDKQTNEMIDVELAAHGHSVIEIKREGERWSVVEDS CCEEEEECCCCCCEEECCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEECCCEEEEECCC PYNRRLTALATPFLVTGPAAGHDRLKTKADPTGTRVIGTLNNCAGGTTPWGTVLIAEENV CCCCEEEEEECCEEEECCCCCCHHCCCCCCCCCCEEEEECCCCCCCCCCCEEEEEEECCH HQYFRGTGAATAESANYKRMGITDKPAYDWARFHDRFDVSKELNEANRFGWMVEFDPYDP HHHHHCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHCCHHHHHHHHHHCEEEEEECCCCC ASVPKKRTALGRFKHEAATTILNADGRLAVYCGDDEAFEYVYKFITTGKVDPANPAANAD CCCCHHHHHHHHHHHHHHHEEECCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCC LLDDGVLFVGKFSADGALRWIPLVHGQGPLTAANGFNSQADVLIEARRAADLLGATPMDR CCCCCEEEEEEECCCCCEEEEEEEECCCCEEECCCCCCCCCEEEEHHHHHHHHCCCCCCC PEDVEPNPVTGTVFMNLTNNTKRKDDRIDAANPRAGNGHGHVIEMIPPGERGKRDHAASE CCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC YTWDIFLLAGNPANPKDGARYGAGGVSESGWLSCPDNMAFDNQGRIWISTDGAPKAGIAD EEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCEEEEECCCCCCCCCCC GIWAADVEGPGRAVTRHFYSAPRGAEMCGPCFTPDNTTFFVAVQHPGDEAKATYENPVTR CEEEECCCCCCHHHHHHHHCCCCCCHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCC WPDFKPDLPPRPSVVAITRKAGGFIGV CCCCCCCCCCCCCEEEEEECCCCCCCC >Mature Secondary Structure MDDHDVPLSVRAADDRENIGVNPTSGARFDTMMAARGVAASDARENLGVNPSTEPSIDDL CCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHCCCCCCCCCCHHHH VAARFGRRAALKGLSAAATLAMLAGTGAVGALSPRSARAATPTGGSSLTFKELPHGYDED HHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEHHHCCCCCCCC HHVAEGYQAQVLIRWGDKVLPGAPAFAPQALTAAAQSAQFGYNNDYVGYFPLPRGSQSSD CHHHCCCEEEEEEEECCEECCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCC HGLLAVNHEYTDRQLMFPGIGPEDQDKQTNEMIDVELAAHGHSVIEIKREGERWSVVEDS CCEEEEECCCCCCEEECCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEECCCEEEEECCC PYNRRLTALATPFLVTGPAAGHDRLKTKADPTGTRVIGTLNNCAGGTTPWGTVLIAEENV CCCCEEEEEECCEEEECCCCCCHHCCCCCCCCCCEEEEECCCCCCCCCCCEEEEEEECCH HQYFRGTGAATAESANYKRMGITDKPAYDWARFHDRFDVSKELNEANRFGWMVEFDPYDP HHHHHCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHCCHHHHHHHHHHCEEEEEECCCCC ASVPKKRTALGRFKHEAATTILNADGRLAVYCGDDEAFEYVYKFITTGKVDPANPAANAD CCCCHHHHHHHHHHHHHHHEEECCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCC LLDDGVLFVGKFSADGALRWIPLVHGQGPLTAANGFNSQADVLIEARRAADLLGATPMDR CCCCCEEEEEEECCCCCEEEEEEEECCCCEEECCCCCCCCCEEEEHHHHHHHHCCCCCCC PEDVEPNPVTGTVFMNLTNNTKRKDDRIDAANPRAGNGHGHVIEMIPPGERGKRDHAASE CCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC YTWDIFLLAGNPANPKDGARYGAGGVSESGWLSCPDNMAFDNQGRIWISTDGAPKAGIAD EEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCEEEEECCCCCCCCCCC GIWAADVEGPGRAVTRHFYSAPRGAEMCGPCFTPDNTTFFVAVQHPGDEAKATYENPVTR CEEEECCCCCCHHHHHHHHCCCCCCHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCC WPDFKPDLPPRPSVVAITRKAGGFIGV CCCCCCCCCCCCCEEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA