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The map label for this gene is lsrD [H]

Identifier: 83593634

GI number: 83593634

Start: 2660263

End: 2661270

Strand: Reverse

Name: lsrD [H]

Synonym: Rru_A2299

Alternate gene names: 83593634

Gene position: 2661270-2660263 (Counterclockwise)

Preceding gene: 83593635

Following gene: 83593633

Centisome position: 61.14

GC content: 62.7

Gene sequence:

>1008_bases
ATGAAGACCGAACCCAAAGCCGGCCTCGATCTGCGCTCCCTGGTCAATCGGGACAACAACATCGTTCAATTGCTGATCAT
GACGGTGCTGATCTTCGTGATCATGACCGCGCTCAGCCCCGATAAGTTCCTGCGCTACTACAACTTCGAATCCATCACCT
ATCTGTTTCCCGAGCTCGGCATCTTATCGATCGCCATGATGGTGGCGATGCTGACGGGCGGCATCGATCTGTCGGTGGTT
GGCATCGCCAATCTGTCGGGGATCCTGGCCGGCATCGTCTTCCACCGCCTGCTCGACCAGTCGGGCGGGGTGGCCGGAGC
CGGTTTGCCGACCGTGGCCCTGGGGATCACCCTGGCGCTTGGCGTCGGCGCCCTGGCCGGAGCGCTCAACGGCCTGTTGA
TCACCCGCTTGCGCATCACGCCGATCCTGGCGACGCTGGGCACGGGGCAGGTCTTCACCGGCATCGCCCTGGTGCTGACC
GGCGGCCCGGCGATCGTCGGCTTTCCCGACGCTTGGTCTTTCATCGGCAATGGCAAGGTGCTGGGGATCGCCACGCCGCT
GTTCGTCTTCCTGGGCGTGGCGGTGCTGATCTCGTTCATGCTGGTGCGCACCACTTTGGGCGTGAACCTGATGCTGATCG
GCACCAATCCCAAGGCGGCGGTCTTTGCCGGTTTGCGTACGGCGCGCATGGTGTTTTACAGCTATGTGCTGACCGGCATG
CTGTCGAGCGTCGCCGGGATCATCCTGTCGGGGCGGACCAATGCCGCCAAATCCGACTATGGCAATTCCTATCTGCTGCA
AGCCGTGCTGATCGCCGTGCTCGGCGGGACCAATCCCGCCGGCGGCAAGGGCTCGGTGCTGGGCGTCGGCATCGCCGTCG
TCGCCTTGATGCTGCTGTCGAGCGGTTTCCAGATCCTGCGCTTTTCCAATCATCTGATCGATTTCATCTGGGGCGCCTTC
CTGCTTCTGGTGATCGCCATCAATGCGTTGCGCAACCGCTCCCGCTGA

Upstream 100 bases:

>100_bases
CCACCTGGCAAAGGGTGGTGGTCGGGATCGTCATCGTCATCGCCACGGCGATCACCGCTTGGCGCGACCGCCGCCGCGGC
GCCTGAGGGAGAGCAAAGCC

Downstream 100 bases:

>100_bases
TCGGTTTTTCGGGAAAAAGGCCTTCCGTCATGTCCGTAACCGCCCTTACGCTGCGTTCTTGCTTTTTCGGGGAAAAGGAG
CGCCCGGTCGTCTCCTTCGC

Product: inner-membrane translocator

Products: NA

Alternate protein names: AI-2 import system permease protein lsrD [H]

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MKTEPKAGLDLRSLVNRDNNIVQLLIMTVLIFVIMTALSPDKFLRYYNFESITYLFPELGILSIAMMVAMLTGGIDLSVV
GIANLSGILAGIVFHRLLDQSGGVAGAGLPTVALGITLALGVGALAGALNGLLITRLRITPILATLGTGQVFTGIALVLT
GGPAIVGFPDAWSFIGNGKVLGIATPLFVFLGVAVLISFMLVRTTLGVNLMLIGTNPKAAVFAGLRTARMVFYSYVLTGM
LSSVAGIILSGRTNAAKSDYGNSYLLQAVLIAVLGGTNPAGGKGSVLGVGIAVVALMLLSSGFQILRFSNHLIDFIWGAF
LLLVIAINALRNRSR

Sequences:

>Translated_335_residues
MKTEPKAGLDLRSLVNRDNNIVQLLIMTVLIFVIMTALSPDKFLRYYNFESITYLFPELGILSIAMMVAMLTGGIDLSVV
GIANLSGILAGIVFHRLLDQSGGVAGAGLPTVALGITLALGVGALAGALNGLLITRLRITPILATLGTGQVFTGIALVLT
GGPAIVGFPDAWSFIGNGKVLGIATPLFVFLGVAVLISFMLVRTTLGVNLMLIGTNPKAAVFAGLRTARMVFYSYVLTGM
LSSVAGIILSGRTNAAKSDYGNSYLLQAVLIAVLGGTNPAGGKGSVLGVGIAVVALMLLSSGFQILRFSNHLIDFIWGAF
LLLVIAINALRNRSR
>Mature_335_residues
MKTEPKAGLDLRSLVNRDNNIVQLLIMTVLIFVIMTALSPDKFLRYYNFESITYLFPELGILSIAMMVAMLTGGIDLSVV
GIANLSGILAGIVFHRLLDQSGGVAGAGLPTVALGITLALGVGALAGALNGLLITRLRITPILATLGTGQVFTGIALVLT
GGPAIVGFPDAWSFIGNGKVLGIATPLFVFLGVAVLISFMLVRTTLGVNLMLIGTNPKAAVFAGLRTARMVFYSYVLTGM
LSSVAGIILSGRTNAAKSDYGNSYLLQAVLIAVLGGTNPAGGKGSVLGVGIAVVALMLLSSGFQILRFSNHLIDFIWGAF
LLLVIAINALRNRSR

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787794, Length=276, Percent_Identity=33.3333333333333, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1790524, Length=307, Percent_Identity=27.6872964169381, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI145693152, Length=313, Percent_Identity=25.5591054313099, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI1790191, Length=313, Percent_Identity=29.3929712460064, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI145693214, Length=233, Percent_Identity=34.7639484978541, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1787793, Length=287, Percent_Identity=28.2229965156794, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788896, Length=324, Percent_Identity=23.7654320987654, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788471, Length=209, Percent_Identity=29.6650717703349, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789992, Length=135, Percent_Identity=31.8518518518519, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI87082395, Length=285, Percent_Identity=28.0701754385965, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34950; Mature: 34950

Theoretical pI: Translated: 10.71; Mature: 10.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTEPKAGLDLRSLVNRDNNIVQLLIMTVLIFVIMTALSPDKFLRYYNFESITYLFPELG
CCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHH
ILSIAMMVAMLTGGIDLSVVGIANLSGILAGIVFHRLLDQSGGVAGAGLPTVALGITLAL
HHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
GVGALAGALNGLLITRLRITPILATLGTGQVFTGIALVLTGGPAIVGFPDAWSFIGNGKV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHEEECCCEEEECCCHHHHHCCCEE
LGIATPLFVFLGVAVLISFMLVRTTLGVNLMLIGTNPKAAVFAGLRTARMVFYSYVLTGM
EEHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
LSSVAGIILSGRTNAAKSDYGNSYLLQAVLIAVLGGTNPAGGKGSVLGVGIAVVALMLLS
HHHHHHHEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
SGFQILRFSNHLIDFIWGAFLLLVIAINALRNRSR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKTEPKAGLDLRSLVNRDNNIVQLLIMTVLIFVIMTALSPDKFLRYYNFESITYLFPELG
CCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHH
ILSIAMMVAMLTGGIDLSVVGIANLSGILAGIVFHRLLDQSGGVAGAGLPTVALGITLAL
HHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
GVGALAGALNGLLITRLRITPILATLGTGQVFTGIALVLTGGPAIVGFPDAWSFIGNGKV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHEEECCCEEEECCCHHHHHCCCEE
LGIATPLFVFLGVAVLISFMLVRTTLGVNLMLIGTNPKAAVFAGLRTARMVFYSYVLTGM
EEHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
LSSVAGIILSGRTNAAKSDYGNSYLLQAVLIAVLGGTNPAGGKGSVLGVGIAVVALMLLS
HHHHHHHEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
SGFQILRFSNHLIDFIWGAFLLLVIAINALRNRSR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA