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The map label for this gene is rbsC [H]

Identifier: 83593635

GI number: 83593635

Start: 2661285

End: 2662262

Strand: Reverse

Name: rbsC [H]

Synonym: Rru_A2300

Alternate gene names: 83593635

Gene position: 2662262-2661285 (Counterclockwise)

Preceding gene: 83593636

Following gene: 83593634

Centisome position: 61.16

GC content: 62.47

Gene sequence:

>978_bases
ATGGCCATCTTCCAAAGATCCGAGGTCGTCATCGGCGCCATCCTGCTTGGTGCGATGGTGCTGATCGGCTTCATCAATCC
GGCGTTCTGGCATCTTGATAACCTGTTCAGCCTGCTGCGCTCGAATGTGATCATCGGCATCATGGCCCTGGGCGTGCTGC
TGGTGATGATCTCGGGCGGCATCGACGTGTCGTTCCCGGCCTTCGCCGTGGCCGCCATGTATTTGACGATCAAGGGCATG
ATTTTGCTCGGCTATGACGGTGTCGTCCTGCCGCTGATCGTCGCCACGCTGATGGGGGCGGCCTTTGGCGCGGTGAACGC
CTTCTTCGTTCACAAGATCCGCATGATCCCGCTGATCGTCACCCTGGGCACCGGTAGCATGGTGCGCGGCTTCCTGCTCG
GCGTCGTTGGCACCAGCATGATCAATATCGACAAGATGCCGCGCGCGCTGATCGATTTCGCCAAGCAAGACGCCATCAGC
ATGCGCAACGCCGATGGCACCACCTATGGCCTGACCGCCATGGTGCTGGTTTACATCGGTCTGGCCATCCTGATCGGCTG
GATCTTGCGCCATACCATGATCGGGCGCGGCATCTATGCCTATGGCGGCGACAAGGAAGCCGCCAGCCGGGCCGGGTTCA
ACACCGGGGCCATCGTCTTTTTCGTGTACTGCACGGCCGGCGCCCTGGCCGGTTTCGCCGGCTTGCTGCATGGCGGCATG
ATCTGGCTGGCCAATCCCCGCGACTTCGTTGGTCTGGAGCTTGATGTGATCGCCGCCGTGGTTCTGGGCGGGGCCAGCAT
CTTCGGCGGCCGCGGCGGGGTGGTCGGCACCATGCTGGGCGTCTTCATGCTGGTGATGATCAAGAACAGCCTGATCATCC
TCAAGGTCGATACCACCTGGCAAAGGGTGGTGGTCGGGATCGTCATCGTCATCGCCACGGCGATCACCGCTTGGCGCGAC
CGCCGCCGCGGCGCCTGA

Upstream 100 bases:

>100_bases
TATGCACCGCGGTCGCTTCGTCGACGACCTGCCGACCGCCACGGTCAGCGAGCAGTCGATCAACGACTTGCTCAAAAGCT
TCACCTGAGGGGAGGGGACG

Downstream 100 bases:

>100_bases
GGGAGAGCAAAGCCATGAAGACCGAACCCAAAGCCGGCCTCGATCTGCGCTCCCTGGTCAATCGGGACAACAACATCGTT
CAATTGCTGATCATGACGGT

Product: inner-membrane translocator

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 324

Protein sequence:

>325_residues
MAIFQRSEVVIGAILLGAMVLIGFINPAFWHLDNLFSLLRSNVIIGIMALGVLLVMISGGIDVSFPAFAVAAMYLTIKGM
ILLGYDGVVLPLIVATLMGAAFGAVNAFFVHKIRMIPLIVTLGTGSMVRGFLLGVVGTSMINIDKMPRALIDFAKQDAIS
MRNADGTTYGLTAMVLVYIGLAILIGWILRHTMIGRGIYAYGGDKEAASRAGFNTGAIVFFVYCTAGALAGFAGLLHGGM
IWLANPRDFVGLELDVIAAVVLGGASIFGGRGGVVGTMLGVFMLVMIKNSLIILKVDTTWQRVVVGIVIVIATAITAWRD
RRRGA

Sequences:

>Translated_325_residues
MAIFQRSEVVIGAILLGAMVLIGFINPAFWHLDNLFSLLRSNVIIGIMALGVLLVMISGGIDVSFPAFAVAAMYLTIKGM
ILLGYDGVVLPLIVATLMGAAFGAVNAFFVHKIRMIPLIVTLGTGSMVRGFLLGVVGTSMINIDKMPRALIDFAKQDAIS
MRNADGTTYGLTAMVLVYIGLAILIGWILRHTMIGRGIYAYGGDKEAASRAGFNTGAIVFFVYCTAGALAGFAGLLHGGM
IWLANPRDFVGLELDVIAAVVLGGASIFGGRGGVVGTMLGVFMLVMIKNSLIILKVDTTWQRVVVGIVIVIATAITAWRD
RRRGA
>Mature_324_residues
AIFQRSEVVIGAILLGAMVLIGFINPAFWHLDNLFSLLRSNVIIGIMALGVLLVMISGGIDVSFPAFAVAAMYLTIKGMI
LLGYDGVVLPLIVATLMGAAFGAVNAFFVHKIRMIPLIVTLGTGSMVRGFLLGVVGTSMINIDKMPRALIDFAKQDAISM
RNADGTTYGLTAMVLVYIGLAILIGWILRHTMIGRGIYAYGGDKEAASRAGFNTGAIVFFVYCTAGALAGFAGLLHGGMI
WLANPRDFVGLELDVIAAVVLGGASIFGGRGGVVGTMLGVFMLVMIKNSLIILKVDTTWQRVVVGIVIVIATAITAWRDR
RRGA

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=311, Percent_Identity=33.1189710610932, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1788896, Length=292, Percent_Identity=32.8767123287671, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1790524, Length=296, Percent_Identity=27.3648648648649, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1789992, Length=349, Percent_Identity=27.7936962750716, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI87082395, Length=309, Percent_Identity=27.5080906148867, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI145693152, Length=305, Percent_Identity=25.5737704918033, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787794, Length=329, Percent_Identity=27.6595744680851, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787793, Length=295, Percent_Identity=31.1864406779661, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788471, Length=330, Percent_Identity=28.1818181818182, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34415; Mature: 34284

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIFQRSEVVIGAILLGAMVLIGFINPAFWHLDNLFSLLRSNVIIGIMALGVLLVMISGG
CCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
IDVSFPAFAVAAMYLTIKGMILLGYDGVVLPLIVATLMGAAFGAVNAFFVHKIRMIPLIV
CCCCHHHHHHHHHHHHHHCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE
TLGTGSMVRGFLLGVVGTSMINIDKMPRALIDFAKQDAISMRNADGTTYGLTAMVLVYIG
EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
LAILIGWILRHTMIGRGIYAYGGDKEAASRAGFNTGAIVFFVYCTAGALAGFAGLLHGGM
HHHHHHHHHHHHHHCCCEEEECCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCE
IWLANPRDFVGLELDVIAAVVLGGASIFGGRGGVVGTMLGVFMLVMIKNSLIILKVDTTW
EEEECCCCHHCCHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCHH
QRVVVGIVIVIATAITAWRDRRRGA
HHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
AIFQRSEVVIGAILLGAMVLIGFINPAFWHLDNLFSLLRSNVIIGIMALGVLLVMISGG
CCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
IDVSFPAFAVAAMYLTIKGMILLGYDGVVLPLIVATLMGAAFGAVNAFFVHKIRMIPLIV
CCCCHHHHHHHHHHHHHHCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE
TLGTGSMVRGFLLGVVGTSMINIDKMPRALIDFAKQDAISMRNADGTTYGLTAMVLVYIG
EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
LAILIGWILRHTMIGRGIYAYGGDKEAASRAGFNTGAIVFFVYCTAGALAGFAGLLHGGM
HHHHHHHHHHHHHHCCCEEEECCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCE
IWLANPRDFVGLELDVIAAVVLGGASIFGGRGGVVGTMLGVFMLVMIKNSLIILKVDTTW
EEEECCCCHHCCHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCHH
QRVVVGIVIVIATAITAWRDRRRGA
HHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]