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The map label for this gene is ydeM [H]

Identifier: 83593529

GI number: 83593529

Start: 2549426

End: 2549905

Strand: Direct

Name: ydeM [H]

Synonym: Rru_A2194

Alternate gene names: 83593529

Gene position: 2549426-2549905 (Clockwise)

Preceding gene: 83593528

Following gene: 83593532

Centisome position: 58.57

GC content: 68.96

Gene sequence:

>480_bases
ATGACCGCAGAGACGCAGCAGCAGACCCCGCTCCCCCGGGCCGGGCTTTTTCTTGAAGACCTTGCGGTGGGCGATCGCTT
CGACAGCGCTCGCCACCGGGTCGAGGCGGCGGCGATCAAGGCCTTCGCCGGCGAATTCGACCCCCAACCCTTTCATCTCG
ACGAGGAGGCGGCGCGCCACAGCCTGTTTGGCGGTCTGGCGGCCAGCGGCTGGCACACCGCCGCCATCACCATGCGCCTG
CTTGTCACCAGCGGCCTGCCGCTGGCCCAGGGCATCATCGGCGCCGGGACCGAGCTTAGCTGGCCCAATCCGACGCGACC
GGGCGATGAGCTTCACGTTGAAACCACCGTGCTGGCCATCACCCCGTCGAAGTCCCGCCCCGACCGCGCCATCGTCACCT
GCCAAAGCGACACCCTCAACCAGCGCGGCGAGGTGGTCCAGCGCTCGACGGCCAAGGTGGTGGTCTTCCGCCGGCCTTAG

Upstream 100 bases:

>100_bases
CCTGGCCCGCCGCCAGACCGAAGCCCTGACCGGCGTCGGCCTCGTGCCCAGTGACCTGGGCGTGGGCTGACCTTTTTTCA
TCCCGGGGGAGCCACGCTTG

Downstream 100 bases:

>100_bases
GGTCTGTCCGCTTGATGCTGAAGCGGACAGACCCTGGATCCCTTTGTTTGAGTTTGTCTTTTCGGGAAAAGCGGTGCCCA
CTTTTCCCTGACAAACTCTA

Product: MaoC-like dehydratase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 159; Mature: 158

Protein sequence:

>159_residues
MTAETQQQTPLPRAGLFLEDLAVGDRFDSARHRVEAAAIKAFAGEFDPQPFHLDEEAARHSLFGGLAASGWHTAAITMRL
LVTSGLPLAQGIIGAGTELSWPNPTRPGDELHVETTVLAITPSKSRPDRAIVTCQSDTLNQRGEVVQRSTAKVVVFRRP

Sequences:

>Translated_159_residues
MTAETQQQTPLPRAGLFLEDLAVGDRFDSARHRVEAAAIKAFAGEFDPQPFHLDEEAARHSLFGGLAASGWHTAAITMRL
LVTSGLPLAQGIIGAGTELSWPNPTRPGDELHVETTVLAITPSKSRPDRAIVTCQSDTLNQRGEVVQRSTAKVVVFRRP
>Mature_158_residues
TAETQQQTPLPRAGLFLEDLAVGDRFDSARHRVEAAAIKAFAGEFDPQPFHLDEEAARHSLFGGLAASGWHTAAITMRLL
VTSGLPLAQGIIGAGTELSWPNPTRPGDELHVETTVLAITPSKSRPDRAIVTCQSDTLNQRGEVVQRSTAKVVVFRRP

Specific function: Unknown

COG id: COG2030

COG function: function code I; Acyl dehydratase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002539 [H]

Pfam domain/function: PF01575 MaoC_dehydratas [H]

EC number: NA

Molecular weight: Translated: 17193; Mature: 17061

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAETQQQTPLPRAGLFLEDLAVGDRFDSARHRVEAAAIKAFAGEFDPQPFHLDEEAARH
CCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
SLFGGLAASGWHTAAITMRLLVTSGLPLAQGIIGAGTELSWPNPTRPGDELHVETTVLAI
HHHCCHHCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEEE
TPSKSRPDRAIVTCQSDTLNQRGEVVQRSTAKVVVFRRP
ECCCCCCCEEEEEECCCCCCHHHHHHCCCCEEEEEEECC
>Mature Secondary Structure 
TAETQQQTPLPRAGLFLEDLAVGDRFDSARHRVEAAAIKAFAGEFDPQPFHLDEEAARH
CCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
SLFGGLAASGWHTAAITMRLLVTSGLPLAQGIIGAGTELSWPNPTRPGDELHVETTVLAI
HHHCCHHCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEEE
TPSKSRPDRAIVTCQSDTLNQRGEVVQRSTAKVVVFRRP
ECCCCCCCEEEEEECCCCCCHHHHHHCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]