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The map label for this gene is cheD

Identifier: 83592743

GI number: 83592743

Start: 1661646

End: 1662176

Strand: Direct

Name: cheD

Synonym: Rru_A1407

Alternate gene names: 83592743

Gene position: 1661646-1662176 (Clockwise)

Preceding gene: 83592742

Following gene: 83592750

Centisome position: 38.17

GC content: 62.71

Gene sequence:

>531_bases
ATGGTCAATTCGATGCCCAAGCCCTTTCTGACCCCTGGAACGCTCTATTGCGGCGCCGCGCCGGCGGTCATCAGCACGGT
ATTGGGATCCTGCGTGGCCGTCTGTCTGATCGATCGCCATAACCGGGCGGCGGGGATGAACCACTTCGTGCTGCCCCACA
ATCCGGCCGGCGAGGACAGCCTGCGCTATGGCGATGTGGCCCTTGACCGGTTGCATGCCCGCATGGGCGAATTGGGCTGT
GAAACCAAGGATCTGCGCGCCAAGGTCTTTGGCGGCGCCGCCGTTCTTCCCTTCGGGGCGACCGGCGACAGCGTTGGCAC
CAAGAATGTCAAGATCGCCATCGAATGGCTGCACGCCCAGGGCATTCCCACCCTGGCCCGGCGGACGGGTGGCGAAAACG
GCCTGCTCATCCGCTTTTATACGGCGACCGGCCGGGTCCTAGTCAGAACGATCCAATCGGCGATCACCATCGACCTGGGC
GGAATCTCGCCAGCCTTTGATTCCCGCCAATCCCCGTTTTTCCAGGAATAA

Upstream 100 bases:

>100_bases
CGGCCGACAAGATCCTGCCGCTCGAGATGCTGGCGATGGAAATTCTGCGCGCCGGTAACCGATGACCTGTCTTTCCCCGT
TGTGGCAGGGCTTTTCGCCG

Downstream 100 bases:

>100_bases
GAGTCAGGCCGCGCGAAAGCAAATCCCGAGCGCTCTGGAGGGGAGTACCACGAGGATTTGCTTCCCTATCAAGGGCTTGG
CGCGGTGAGGGGGCGGGCGT

Product: CheD, stimulates methylation of MCP proteins

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 176

Protein sequence:

>176_residues
MVNSMPKPFLTPGTLYCGAAPAVISTVLGSCVAVCLIDRHNRAAGMNHFVLPHNPAGEDSLRYGDVALDRLHARMGELGC
ETKDLRAKVFGGAAVLPFGATGDSVGTKNVKIAIEWLHAQGIPTLARRTGGENGLLIRFYTATGRVLVRTIQSAITIDLG
GISPAFDSRQSPFFQE

Sequences:

>Translated_176_residues
MVNSMPKPFLTPGTLYCGAAPAVISTVLGSCVAVCLIDRHNRAAGMNHFVLPHNPAGEDSLRYGDVALDRLHARMGELGC
ETKDLRAKVFGGAAVLPFGATGDSVGTKNVKIAIEWLHAQGIPTLARRTGGENGLLIRFYTATGRVLVRTIQSAITIDLG
GISPAFDSRQSPFFQE
>Mature_176_residues
MVNSMPKPFLTPGTLYCGAAPAVISTVLGSCVAVCLIDRHNRAAGMNHFVLPHNPAGEDSLRYGDVALDRLHARMGELGC
ETKDLRAKVFGGAAVLPFGATGDSVGTKNVKIAIEWLHAQGIPTLARRTGGENGLLIRFYTATGRVLVRTIQSAITIDLG
GISPAFDSRQSPFFQE

Specific function: Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis

COG id: COG1871

COG function: function code NT; Chemotaxis protein; stimulates methylation of MCP proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CheD family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CHED_RHORT (Q2RUI7)

Other databases:

- EMBL:   CP000230
- RefSeq:   YP_426495.1
- HSSP:   Q9X005
- ProteinModelPortal:   Q2RUI7
- SMR:   Q2RUI7
- STRING:   Q2RUI7
- GeneID:   3834822
- GenomeReviews:   CP000230_GR
- KEGG:   rru:Rru_A1407
- NMPDR:   fig|1085.1.peg.2959
- eggNOG:   COG1871
- HOGENOM:   HBG531149
- OMA:   SERAYDG
- BioCyc:   RRUB269796:RRU_A1407-MONOMER
- GO:   GO:0006935
- HAMAP:   MF_01440
- InterPro:   IPR005659

Pfam domain/function: PF03975 CheD

EC number: =3.5.1.44

Molecular weight: Translated: 18706; Mature: 18706

Theoretical pI: Translated: 8.66; Mature: 8.66

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVNSMPKPFLTPGTLYCGAAPAVISTVLGSCVAVCLIDRHNRAAGMNHFVLPHNPAGEDS
CCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCC
LRYGDVALDRLHARMGELGCETKDLRAKVFGGAAVLPFGATGDSVGTKNVKIAIEWLHAQ
CCHHHHHHHHHHHHHHHHCCCCHHHHHEECCCEEEEECCCCCCCCCCCCEEEEEEEEECC
GIPTLARRTGGENGLLIRFYTATGRVLVRTIQSAITIDLGGISPAFDSRQSPFFQE
CCCHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MVNSMPKPFLTPGTLYCGAAPAVISTVLGSCVAVCLIDRHNRAAGMNHFVLPHNPAGEDS
CCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCC
LRYGDVALDRLHARMGELGCETKDLRAKVFGGAAVLPFGATGDSVGTKNVKIAIEWLHAQ
CCHHHHHHHHHHHHHHHHCCCCHHHHHEECCCEEEEECCCCCCCCCCCCEEEEEEEEECC
GIPTLARRTGGENGLLIRFYTATGRVLVRTIQSAITIDLGGISPAFDSRQSPFFQE
CCCHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA