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The map label for this gene is hypB [H]

Identifier: 83592505

GI number: 83592505

Start: 1385409

End: 1386215

Strand: Direct

Name: hypB [H]

Synonym: Rru_A1169

Alternate gene names: 83592505

Gene position: 1385409-1386215 (Clockwise)

Preceding gene: 83592504

Following gene: 83592506

Centisome position: 31.83

GC content: 65.3

Gene sequence:

>807_bases
ATGTGTAGCGTTTGCGGATGCGCGCCGGGGACGGACCACGCCCCCCACGATCACGCCCATGACCACGATCATTCCCATGA
CCATGACCACGATCATTCCCCTGCTTCCCAGGGCGGGGGATTTGCCGCCGAGGCCGGCCGGCTGATCCGCATCGAGCGCG
ACGTGCTGTCGATCAACGACCGCTTCGCCGCCCTTAACCGCCAGCGTTTGGCCGGGCGCGGGATTTTGGCGCTCAATCTG
GTCAGCAGCCCGGGCTCGGGCAAAACCACGCTACTCGCCCGCACCGTCGGCGACCTCAAGGACTGGGCGCCCTGCGCGGT
GATCGAAGGCGATCAACAGACCGACTTGGATGCCGAGCGCATCCGGGCGACCGGGGTCAGCGCGGTTCAGATCAACACCG
GCAAGGGCTGCCATCTTGACGCCCATAGGGTCGGTCACGCCCTTGATAGCCTTGATCCGCCCGAGGGCGCCCTGCTGTTC
ATCGAAAATGTCGGCAATCTGGTCTGCCCGGCCGCCTTCGACCTGGGCGAGGCCCATAAGGTGGTTTTCCTGTCGGTCAC
CGAGGGCGAGGACAAGCCGCTCAAATACCCCGACATGTTCGCCGTCAGCGATCTGATGGTGCTGACCAAGGCCGATCTGC
TGCCCTATGTCAGCTTCGATGTGGAGCGCTGTTGGGAGTATGCCCGGCGTGTGCGCCCCGATCTGCCGATACTGGTGGTC
TCGGCGGTGAGCGGCCAGGGGCTGGAGGACTGGTATGCCTGGATCCGCGCTGAACGGGCCGCCCGCACGCCGCCGAAGGA
CGATTAA

Upstream 100 bases:

>100_bases
CCCTGCCGCGCCGGGGCGAGGCCTGCCCGCTGTGCGGGGGCTACAAGATCCAGGTCACCGGCGGCGATGATCTGACAATC
AAGGAACTGGAGGTCGATTG

Downstream 100 bases:

>100_bases
TGTCCGCCTTTCCCCGGGAAGGGGAGAAGGTTATCCTCGGGCGATGACGGAACGGCCGCTTATTTTGGTAGTGGAGGGAG
AGTCCCGAACCCGGGGGGCG

Product: hydrogenase accessory protein HypB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MCSVCGCAPGTDHAPHDHAHDHDHSHDHDHDHSPASQGGGFAAEAGRLIRIERDVLSINDRFAALNRQRLAGRGILALNL
VSSPGSGKTTLLARTVGDLKDWAPCAVIEGDQQTDLDAERIRATGVSAVQINTGKGCHLDAHRVGHALDSLDPPEGALLF
IENVGNLVCPAAFDLGEAHKVVFLSVTEGEDKPLKYPDMFAVSDLMVLTKADLLPYVSFDVERCWEYARRVRPDLPILVV
SAVSGQGLEDWYAWIRAERAARTPPKDD

Sequences:

>Translated_268_residues
MCSVCGCAPGTDHAPHDHAHDHDHSHDHDHDHSPASQGGGFAAEAGRLIRIERDVLSINDRFAALNRQRLAGRGILALNL
VSSPGSGKTTLLARTVGDLKDWAPCAVIEGDQQTDLDAERIRATGVSAVQINTGKGCHLDAHRVGHALDSLDPPEGALLF
IENVGNLVCPAAFDLGEAHKVVFLSVTEGEDKPLKYPDMFAVSDLMVLTKADLLPYVSFDVERCWEYARRVRPDLPILVV
SAVSGQGLEDWYAWIRAERAARTPPKDD
>Mature_268_residues
MCSVCGCAPGTDHAPHDHAHDHDHSHDHDHDHSPASQGGGFAAEAGRLIRIERDVLSINDRFAALNRQRLAGRGILALNL
VSSPGSGKTTLLARTVGDLKDWAPCAVIEGDQQTDLDAERIRATGVSAVQINTGKGCHLDAHRVGHALDSLDPPEGALLF
IENVGNLVCPAAFDLGEAHKVVFLSVTEGEDKPLKYPDMFAVSDLMVLTKADLLPYVSFDVERCWEYARRVRPDLPILVV
SAVSGQGLEDWYAWIRAERAARTPPKDD

Specific function: Could be involved in nickel binding and accumulation [H]

COG id: COG0378

COG function: function code OK; Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hypB/hupM family [H]

Homologues:

Organism=Escherichia coli, GI1789082, Length=290, Percent_Identity=50.6896551724138, Blast_Score=277, Evalue=4e-76,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003495
- InterPro:   IPR004392
- InterPro:   IPR012202 [H]

Pfam domain/function: PF02492 cobW [H]

EC number: NA

Molecular weight: Translated: 29059; Mature: 29059

Theoretical pI: Translated: 5.48; Mature: 5.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCSVCGCAPGTDHAPHDHAHDHDHSHDHDHDHSPASQGGGFAAEAGRLIRIERDVLSIND
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCEEEEECHHHHHHH
RFAALNRQRLAGRGILALNLVSSPGSGKTTLLARTVGDLKDWAPCAVIEGDQQTDLDAER
HHHHHHHHHHCCCCEEEEEEECCCCCCCEEEEEHHHHHHHCCCCEEEECCCCCCCCCHHH
IRATGVSAVQINTGKGCHLDAHRVGHALDSLDPPEGALLFIENVGNLVCPAAFDLGEAHK
HHHCCCEEEEEECCCCCEECHHHHHHHHHCCCCCCCCEEEEECCCCEECCCCCCCCCCCE
VVFLSVTEGEDKPLKYPDMFAVSDLMVLTKADLLPYVSFDVERCWEYARRVRPDLPILVV
EEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
SAVSGQGLEDWYAWIRAERAARTPPKDD
EECCCCCHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MCSVCGCAPGTDHAPHDHAHDHDHSHDHDHDHSPASQGGGFAAEAGRLIRIERDVLSIND
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCEEEEECHHHHHHH
RFAALNRQRLAGRGILALNLVSSPGSGKTTLLARTVGDLKDWAPCAVIEGDQQTDLDAER
HHHHHHHHHHCCCCEEEEEEECCCCCCCEEEEEHHHHHHHCCCCEEEECCCCCCCCCHHH
IRATGVSAVQINTGKGCHLDAHRVGHALDSLDPPEGALLFIENVGNLVCPAAFDLGEAHK
HHHCCCEEEEEECCCCCEECHHHHHHHHHCCCCCCCCEEEEECCCCEECCCCCCCCCCCE
VVFLSVTEGEDKPLKYPDMFAVSDLMVLTKADLLPYVSFDVERCWEYARRVRPDLPILVV
EEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
SAVSGQGLEDWYAWIRAERAARTPPKDD
EECCCCCHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8486288 [H]