Click here to switch to the map view.

The map label for this gene is hypA [H]

Identifier: 83592504

GI number: 83592504

Start: 1385068

End: 1385409

Strand: Direct

Name: hypA [H]

Synonym: Rru_A1168

Alternate gene names: 83592504

Gene position: 1385068-1385409 (Clockwise)

Preceding gene: 83592503

Following gene: 83592505

Centisome position: 31.82

GC content: 69.88

Gene sequence:

>342_bases
ATGCATGAACTGGCTTTGGCCGAGGGGGTGATCGGGGTGATCACCCAGGAGGCGGGGCGTCAGGGCTTCACCCGGGTGCG
GCTGGTGCGGCTGGAGATCGGCGCCCTGGCGGCGGTCGAGCCCGAGGCCCTGGCCTTCTGTTTCGCCGCCGTCGCCCGCG
GCACGGCGAGCGAGGGGGCGCGCCTTGATCTGGTGGTTCTGCCCGGAAGCGGCTGGTGCCTGGATTGCGGCCAAACGATC
GCCCTGCCGCGCCGGGGCGAGGCCTGCCCGCTGTGCGGGGGCTACAAGATCCAGGTCACCGGCGGCGATGATCTGACAAT
CAAGGAACTGGAGGTCGATTGA

Upstream 100 bases:

>100_bases
GTGAGCGGAACCGAGGAGGCCTGCCTTTTGGCCCATTGGCTGGTTCTGGCCCTGGATCCTTGCGTGCCCTGCGTCATCAC
GGCGATCGGGGAGGGGGCGG

Downstream 100 bases:

>100_bases
TGTGTAGCGTTTGCGGATGCGCGCCGGGGACGGACCACGCCCCCCACGATCACGCCCATGACCACGATCATTCCCATGAC
CATGACCACGATCATTCCCC

Product: hydrogenase expression/synthesis, HypA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 113; Mature: 113

Protein sequence:

>113_residues
MHELALAEGVIGVITQEAGRQGFTRVRLVRLEIGALAAVEPEALAFCFAAVARGTASEGARLDLVVLPGSGWCLDCGQTI
ALPRRGEACPLCGGYKIQVTGGDDLTIKELEVD

Sequences:

>Translated_113_residues
MHELALAEGVIGVITQEAGRQGFTRVRLVRLEIGALAAVEPEALAFCFAAVARGTASEGARLDLVVLPGSGWCLDCGQTI
ALPRRGEACPLCGGYKIQVTGGDDLTIKELEVD
>Mature_113_residues
MHELALAEGVIGVITQEAGRQGFTRVRLVRLEIGALAAVEPEALAFCFAAVARGTASEGARLDLVVLPGSGWCLDCGQTI
ALPRRGEACPLCGGYKIQVTGGDDLTIKELEVD

Specific function: Probably plays a role in an hydrogenase nickel cofactor insertion step [H]

COG id: COG0375

COG function: function code R; Zn finger protein HypA/HybF (possibly regulating hydrogenase expression)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hypA/hybF family [H]

Homologues:

Organism=Escherichia coli, GI1789365, Length=113, Percent_Identity=39.8230088495575, Blast_Score=100, Evalue=2e-23,
Organism=Escherichia coli, GI1789081, Length=114, Percent_Identity=39.4736842105263, Blast_Score=89, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000688
- InterPro:   IPR020538 [H]

Pfam domain/function: PF01155 HypA [H]

EC number: NA

Molecular weight: Translated: 11824; Mature: 11824

Theoretical pI: Translated: 4.49; Mature: 4.49

Prosite motif: PS01249 HYPA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
4.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHELALAEGVIGVITQEAGRQGFTRVRLVRLEIGALAAVEPEALAFCFAAVARGTASEGA
CCCCHHHCCCEEEEECCCCCCCCEEEEEEEEEECEEEEECHHHHHHHHHHHHCCCCCCCC
RLDLVVLPGSGWCLDCGQTIALPRRGEACPLCGGYKIQVTGGDDLTIKELEVD
EEEEEEECCCCEEECCCCEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECC
>Mature Secondary Structure
MHELALAEGVIGVITQEAGRQGFTRVRLVRLEIGALAAVEPEALAFCFAAVARGTASEGA
CCCCHHHCCCEEEEECCCCCCCCEEEEEEEEEECEEEEECHHHHHHHHHHHHCCCCCCCC
RLDLVVLPGSGWCLDCGQTIALPRRGEACPLCGGYKIQVTGGDDLTIKELEVD
EEEEEEECCCCEEECCCCEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA