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The map label for this gene is ylmE [H]

Identifier: 83592477

GI number: 83592477

Start: 1346812

End: 1347627

Strand: Reverse

Name: ylmE [H]

Synonym: Rru_A1141

Alternate gene names: 83592477

Gene position: 1347627-1346812 (Counterclockwise)

Preceding gene: 83592478

Following gene: 83592469

Centisome position: 30.96

GC content: 65.2

Gene sequence:

>816_bases
ATGACAGACTCATTGACCGTCGATCTTTCAGAGGAAGACGTGGCGCGCTTCGGGACGGATCCCGCCCGCGCCTTTGCCGC
CAACTTGCTGACTGTGCGAGACCGCATCGCCTCGGCTTGCCGTCGATGCGGCCGTCAGCCCGAGGAGGTGCGTCTGCTCC
CCGTCACCAAGACGGTTCCGGCCCCTCTCTTGCGTCTGGCCTTCGCGGCGGGCCTCTCCGACTTCGCCGAGAACAAGCTG
CAAGAGGCGCGCGACAAGCAGGTCGAGCTTGCCGATCTCGCGATCCGTTGGAGCATCATCGGCCACCTCCAGACCAACAA
GGTGAAATATCTTGTCCGCTTCGCCGCGGAATTCCACGCCCTCGACAGCCTGCGGCTGGCGGAGGAGATGAACCGCCGCC
TTGACGCGCAGGGGCGCGATCTCGACGTGTTCGTGCAGGTGAACACCTCCGGCGAAGCCAGCAAATACGGTTTGCCCCCC
GCCGAAGTGATACCGTTCGTAGAACGCTTGGCGGACTACCCCCGCCTGAAGCCGCGCGGCCTGATGACGCTGGCGATCTT
CAGCGCCGATACCGACCGTGTGCGGACGTGCTTCCGCTTGCTGCGCGCTCTGCGCGACCAGACCGCCACCCTCCATCCCG
GCATGACGCAACTGTCGATGGGCATGTCGGGGGACTACGAGGCGGCCATCGAGGAAGGCGCCGATGTCGTTCGCGTCGGC
CAAGCCATCTTCGGCCCCCGTCCGACCGCCGACGCCTTTTACTGGCCCGGCCTCATTCCACCGCCCGATCAGCAGAAATC
TGGAAACGCCCCATGA

Upstream 100 bases:

>100_bases
CTCGAGGCCGACCGGGAGGGCATCCGCACCCGGGTGCGCAGCCTCGTGGCGGGTTTTCCCCTGCCTTACTGACCACCACA
CCCGGGGAGCCCGTTTTGCT

Downstream 100 bases:

>100_bases
AGGACCGCCAAATCCCAGGCGATGGGAACCAGAGTTAGACCGCGAACATAAAGTCTAATCGTCCGATCGCTCCATGCGAT
CTTCCGATCACGGACTGGGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 270

Protein sequence:

>271_residues
MTDSLTVDLSEEDVARFGTDPARAFAANLLTVRDRIASACRRCGRQPEEVRLLPVTKTVPAPLLRLAFAAGLSDFAENKL
QEARDKQVELADLAIRWSIIGHLQTNKVKYLVRFAAEFHALDSLRLAEEMNRRLDAQGRDLDVFVQVNTSGEASKYGLPP
AEVIPFVERLADYPRLKPRGLMTLAIFSADTDRVRTCFRLLRALRDQTATLHPGMTQLSMGMSGDYEAAIEEGADVVRVG
QAIFGPRPTADAFYWPGLIPPPDQQKSGNAP

Sequences:

>Translated_271_residues
MTDSLTVDLSEEDVARFGTDPARAFAANLLTVRDRIASACRRCGRQPEEVRLLPVTKTVPAPLLRLAFAAGLSDFAENKL
QEARDKQVELADLAIRWSIIGHLQTNKVKYLVRFAAEFHALDSLRLAEEMNRRLDAQGRDLDVFVQVNTSGEASKYGLPP
AEVIPFVERLADYPRLKPRGLMTLAIFSADTDRVRTCFRLLRALRDQTATLHPGMTQLSMGMSGDYEAAIEEGADVVRVG
QAIFGPRPTADAFYWPGLIPPPDQQKSGNAP
>Mature_270_residues
TDSLTVDLSEEDVARFGTDPARAFAANLLTVRDRIASACRRCGRQPEEVRLLPVTKTVPAPLLRLAFAAGLSDFAENKLQ
EARDKQVELADLAIRWSIIGHLQTNKVKYLVRFAAEFHALDSLRLAEEMNRRLDAQGRDLDVFVQVNTSGEASKYGLPPA
EVIPFVERLADYPRLKPRGLMTLAIFSADTDRVRTCFRLLRALRDQTATLHPGMTQLSMGMSGDYEAAIEEGADVVRVGQ
AIFGPRPTADAFYWPGLIPPPDQQKSGNAP

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=246, Percent_Identity=37.8048780487805, Blast_Score=130, Evalue=1e-30,
Organism=Escherichia coli, GI1789321, Length=229, Percent_Identity=41.0480349344978, Blast_Score=150, Evalue=6e-38,
Organism=Caenorhabditis elegans, GI17533025, Length=224, Percent_Identity=31.6964285714286, Blast_Score=97, Evalue=8e-21,
Organism=Saccharomyces cerevisiae, GI6319435, Length=245, Percent_Identity=29.7959183673469, Blast_Score=93, Evalue=4e-20,
Organism=Drosophila melanogaster, GI45550861, Length=223, Percent_Identity=32.7354260089686, Blast_Score=101, Evalue=5e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 29979; Mature: 29847

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDSLTVDLSEEDVARFGTDPARAFAANLLTVRDRIASACRRCGRQPEEVRLLPVTKTVP
CCCCEEEECCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCH
APLLRLAFAAGLSDFAENKLQEARDKQVELADLAIRWSIIGHLQTNKVKYLVRFAAEFHA
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LDSLRLAEEMNRRLDAQGRDLDVFVQVNTSGEASKYGLPPAEVIPFVERLADYPRLKPRG
HHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
LMTLAIFSADTDRVRTCFRLLRALRDQTATLHPGMTQLSMGMSGDYEAAIEEGADVVRVG
EEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCHHHHHHCCCHHHHHH
QAIFGPRPTADAFYWPGLIPPPDQQKSGNAP
HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TDSLTVDLSEEDVARFGTDPARAFAANLLTVRDRIASACRRCGRQPEEVRLLPVTKTVP
CCCEEEECCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCH
APLLRLAFAAGLSDFAENKLQEARDKQVELADLAIRWSIIGHLQTNKVKYLVRFAAEFHA
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LDSLRLAEEMNRRLDAQGRDLDVFVQVNTSGEASKYGLPPAEVIPFVERLADYPRLKPRG
HHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
LMTLAIFSADTDRVRTCFRLLRALRDQTATLHPGMTQLSMGMSGDYEAAIEEGADVVRVG
EEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCHHHHHHCCCHHHHHH
QAIFGPRPTADAFYWPGLIPPPDQQKSGNAP
HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]