Click here to switch to the map view.

The map label for this gene is ybgC [C]

Identifier: 83592426

GI number: 83592426

Start: 1279658

End: 1280107

Strand: Direct

Name: ybgC [C]

Synonym: Rru_A1090

Alternate gene names: 83592426

Gene position: 1279658-1280107 (Clockwise)

Preceding gene: 83592425

Following gene: 83592427

Centisome position: 29.4

GC content: 64.89

Gene sequence:

>450_bases
ATGACCCAGTCCTTGACGCCGACCAGCGGCCTCTGGCGCCAGGGGTGCCACTTGTTGCCCGTGCGCGTGCATTGGGAAAA
CACCGATGCCGGGGGTATCGTCTACCACGCCGAATACCTGAAGTTCGCCGAGCGGGCGCGCACCGAGATGCTGCGACTGG
CCGGAATTCACCAGGGATCGATGCTGGCGGGCGAGGGGGTGGGCTTCGCCGTGGCGAAGCTGTCGATCGACTACAAGCGT
CCGGCCAAGCTGGACGACGCCCTGGTGGTGGAAACCACGCTCGATGCCGTTGGCGGCGCCGTGCTCGATCTCACCCAGAC
TATCCGCCGCGAGGGTGATCCTCTGGCGATCTTGAAGGTGCGCGTGGCCTGTCTGTCGCTGAAGGCCGGCGTTCCCATCC
GCATTCCCGCCATCATGCGGGAGAAACTTGTACCAGGAAACGGCGACTGA

Upstream 100 bases:

>100_bases
CGCGCGGCCGGATGCTGACGGCGATCGCCTGGACCCATCTTGGGCTGACACCGCCGGCCGAGACGCCGCCGGTTCAGCCC
GACCTGTGGTCCGACGCCCC

Downstream 100 bases:

>100_bases
CCACACGGACACGGGGTTGATTATGGACTACCTCTCCATGGACGCGATAACCCAGCTGACCGGCCAGATGGCCAGCCACT
TGGGCATCGCCGGGCTCGAT

Product: 4-hydroxybenzoyl-CoA thioesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 148

Protein sequence:

>149_residues
MTQSLTPTSGLWRQGCHLLPVRVHWENTDAGGIVYHAEYLKFAERARTEMLRLAGIHQGSMLAGEGVGFAVAKLSIDYKR
PAKLDDALVVETTLDAVGGAVLDLTQTIRREGDPLAILKVRVACLSLKAGVPIRIPAIMREKLVPGNGD

Sequences:

>Translated_149_residues
MTQSLTPTSGLWRQGCHLLPVRVHWENTDAGGIVYHAEYLKFAERARTEMLRLAGIHQGSMLAGEGVGFAVAKLSIDYKR
PAKLDDALVVETTLDAVGGAVLDLTQTIRREGDPLAILKVRVACLSLKAGVPIRIPAIMREKLVPGNGD
>Mature_148_residues
TQSLTPTSGLWRQGCHLLPVRVHWENTDAGGIVYHAEYLKFAERARTEMLRLAGIHQGSMLAGEGVGFAVAKLSIDYKRP
AKLDDALVVETTLDAVGGAVLDLTQTIRREGDPLAILKVRVACLSLKAGVPIRIPAIMREKLVPGNGD

Specific function: Unknown

COG id: COG0824

COG function: function code R; Predicted thioesterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 4-hydroxybenzoyl-CoA thioesterase family [H]

Homologues:

Organism=Escherichia coli, GI1786957, Length=107, Percent_Identity=46.7289719626168, Blast_Score=96, Evalue=8e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006684
- InterPro:   IPR008272
- InterPro:   IPR006683
- InterPro:   IPR014166 [H]

Pfam domain/function: PF03061 4HBT [H]

EC number: NA

Molecular weight: Translated: 16126; Mature: 15995

Theoretical pI: Translated: 8.73; Mature: 8.73

Prosite motif: PS01328 4HBCOA_THIOESTERASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQSLTPTSGLWRQGCHLLPVRVHWENTDAGGIVYHAEYLKFAERARTEMLRLAGIHQGS
CCCCCCCCCCHHHCCCEEEEEEEEECCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCC
MLAGEGVGFAVAKLSIDYKRPAKLDDALVVETTLDAVGGAVLDLTQTIRREGDPLAILKV
EEECCCCCEEEEEEEECCCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHHHCCCCEEHHHH
RVACLSLKAGVPIRIPAIMREKLVPGNGD
HHHHHHHCCCCCEEEHHHHHHHCCCCCCC
>Mature Secondary Structure 
TQSLTPTSGLWRQGCHLLPVRVHWENTDAGGIVYHAEYLKFAERARTEMLRLAGIHQGS
CCCCCCCCCHHHCCCEEEEEEEEECCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCC
MLAGEGVGFAVAKLSIDYKRPAKLDDALVVETTLDAVGGAVLDLTQTIRREGDPLAILKV
EEECCCCCEEEEEEEECCCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHHHCCCCEEHHHH
RVACLSLKAGVPIRIPAIMREKLVPGNGD
HHHHHHHCCCCCEEEHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]