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The map label for this gene is yfkH [H]

Identifier: 83591770

GI number: 83591770

Start: 502245

End: 503186

Strand: Direct

Name: yfkH [H]

Synonym: Rru_A0430

Alternate gene names: 83591770

Gene position: 502245-503186 (Clockwise)

Preceding gene: 83591769

Following gene: 83591776

Centisome position: 11.54

GC content: 66.67

Gene sequence:

>942_bases
GTGAACGCAAAATCCCGGCCGTCGCGTAAACTATTGAAGGGGGCGGTGATCGGCCCGGCGCAACTGATGGCCGATCAGCC
GTTTTCGGTGATTCGCGCCGTCAGCCGGCGCAGCGACCGCGATCATGTTGGGGTGCTGGCCGCCGGGGTGGCGTTTTTTT
CGCTGCTGGCCAGCTTTCCCGCCCTGGTCACGCTGATCACCCTCTATGGCCTGTTCACCGGCCCGCAAGAAGCCGTGCGC
CAGATCGCCGAGGCGGGGGTTTACCTGCCGCGCGGCGTTCACGACCTGCTGGCCGAGCACCTGCCCCGCCTTGCCCAGGC
GTCGCCGGGCTCGCTGGGTCTGGGGGCGATCACCAGCCTGCTTTTTTCCATATGGAGCGCTTCGCGCGGCATGGGCGCCA
TGGTCGATGGCGTCGATATCGCCTATCAGGTCGGCGATGGCCGGGGCTTTCTGCGCAAATCAATCCTGGTGGTCGGCCTG
ACCCTGGCCGGGCTTGTCGTCAGCGCCATCGCCCTGCCGCTGATCGTCGGCCTGCCCGCCTTGTTCGATCGCCTGCCCTT
GCCGTTGGAAATCCGCTGGGCCTTGGCCCTGGCCCGCTGGCCGCTGTTGTTCGCCCTGGTTCTTGGGGCGTTGGCCGTGC
TGTTTCGCTATGCCCCCGACCGCGAGAATCCGCGCTGGCGCTGGGTGACCCCCGGCGCCCTGGCGGCGGCGACGCTGTGG
ATCCTGGCTTCGGGCGGGCTGTCGCTCTATGTCGGGTTGGTCAGCAGCTACGACCAGACCTATGGTACCCTGGCCGGGGT
CGTCGTGGCGATGATGTGGCTTTACCTCGCCTCTTATGCGGTTCTTCTGGGCGCGGAAATCAATGCCGAGCTTGAAGATC
GCGGCATGGAGCGCATCAAGAAGGATCAGGCGGCGGCCAAGGCCGCCGTCGCCCGGGCTTAA

Upstream 100 bases:

>100_bases
TGCGCGGCGCCGGGGAATAGGCGCCGCGCCTAGCGATCGCGTGGCAACAAGGCTGGGGCGAAAGCGTTGACGGGGCAGAG
GCAACCGAGGGAAGCCGACC

Downstream 100 bases:

>100_bases
ACCGACCCGGCGGCATCGACCGCCCGGGCCAGGGCGGCGAAGCCCTCCACCGGAATGGTTTCCGCCCGCGCCGTGGGATC
AAGACCGGCGGCGGCGCAGA

Product: ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MNAKSRPSRKLLKGAVIGPAQLMADQPFSVIRAVSRRSDRDHVGVLAAGVAFFSLLASFPALVTLITLYGLFTGPQEAVR
QIAEAGVYLPRGVHDLLAEHLPRLAQASPGSLGLGAITSLLFSIWSASRGMGAMVDGVDIAYQVGDGRGFLRKSILVVGL
TLAGLVVSAIALPLIVGLPALFDRLPLPLEIRWALALARWPLLFALVLGALAVLFRYAPDRENPRWRWVTPGALAAATLW
ILASGGLSLYVGLVSSYDQTYGTLAGVVVAMMWLYLASYAVLLGAEINAELEDRGMERIKKDQAAAKAAVARA

Sequences:

>Translated_313_residues
MNAKSRPSRKLLKGAVIGPAQLMADQPFSVIRAVSRRSDRDHVGVLAAGVAFFSLLASFPALVTLITLYGLFTGPQEAVR
QIAEAGVYLPRGVHDLLAEHLPRLAQASPGSLGLGAITSLLFSIWSASRGMGAMVDGVDIAYQVGDGRGFLRKSILVVGL
TLAGLVVSAIALPLIVGLPALFDRLPLPLEIRWALALARWPLLFALVLGALAVLFRYAPDRENPRWRWVTPGALAAATLW
ILASGGLSLYVGLVSSYDQTYGTLAGVVVAMMWLYLASYAVLLGAEINAELEDRGMERIKKDQAAAKAAVARA
>Mature_313_residues
MNAKSRPSRKLLKGAVIGPAQLMADQPFSVIRAVSRRSDRDHVGVLAAGVAFFSLLASFPALVTLITLYGLFTGPQEAVR
QIAEAGVYLPRGVHDLLAEHLPRLAQASPGSLGLGAITSLLFSIWSASRGMGAMVDGVDIAYQVGDGRGFLRKSILVVGL
TLAGLVVSAIALPLIVGLPALFDRLPLPLEIRWALALARWPLLFALVLGALAVLFRYAPDRENPRWRWVTPGALAAATLW
ILASGGLSLYVGLVSSYDQTYGTLAGVVVAMMWLYLASYAVLLGAEINAELEDRGMERIKKDQAAAKAAVARA

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 33310; Mature: 33310

Theoretical pI: Translated: 10.26; Mature: 10.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAKSRPSRKLLKGAVIGPAQLMADQPFSVIRAVSRRSDRDHVGVLAAGVAFFSLLASFP
CCCCCCCHHHHHHHHCCCHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
ALVTLITLYGLFTGPQEAVRQIAEAGVYLPRGVHDLLAEHLPRLAQASPGSLGLGAITSL
HHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHH
LFSIWSASRGMGAMVDGVDIAYQVGDGRGFLRKSILVVGLTLAGLVVSAIALPLIVGLPA
HHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFDRLPLPLEIRWALALARWPLLFALVLGALAVLFRYAPDRENPRWRWVTPGALAAATLW
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHH
ILASGGLSLYVGLVSSYDQTYGTLAGVVVAMMWLYLASYAVLLGAEINAELEDRGMERIK
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
KDQAAAKAAVARA
HHHHHHHHHHHCC
>Mature Secondary Structure
MNAKSRPSRKLLKGAVIGPAQLMADQPFSVIRAVSRRSDRDHVGVLAAGVAFFSLLASFP
CCCCCCCHHHHHHHHCCCHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
ALVTLITLYGLFTGPQEAVRQIAEAGVYLPRGVHDLLAEHLPRLAQASPGSLGLGAITSL
HHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHH
LFSIWSASRGMGAMVDGVDIAYQVGDGRGFLRKSILVVGLTLAGLVVSAIALPLIVGLPA
HHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFDRLPLPLEIRWALALARWPLLFALVLGALAVLFRYAPDRENPRWRWVTPGALAAATLW
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHH
ILASGGLSLYVGLVSSYDQTYGTLAGVVVAMMWLYLASYAVLLGAEINAELEDRGMERIK
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
KDQAAAKAAVARA
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969503; 9384377 [H]