| Definition | Rhodospirillum rubrum ATCC 11170 chromosome, complete genome. |
|---|---|
| Accession | NC_007643 |
| Length | 4,352,825 |
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The map label for this gene is secA
Identifier: 161777629
GI number: 161777629
Start: 290261
End: 292951
Strand: Direct
Name: secA
Synonym: Rru_A0235
Alternate gene names: 161777629
Gene position: 290261-292951 (Clockwise)
Preceding gene: 83591570
Following gene: 83591576
Centisome position: 6.67
GC content: 63.47
Gene sequence:
>2691_bases ATGTTCGGCGCCATTGCCCGGCGGCTTTTCGGATCTGCCAACGACCGTATCGTCAAAAGCCTTGTCAAAACGGTCGCGGC CATCAACGCCAAGGAAAGCGAGGTGCAAGGTCTGTCCGATGCCGACCTCGCGGCCCGCACCCCCTGGCTCAAAAGCCGGC TGGCCGAGGGGGAAACCCTCGACGATATTCTGGTCGATGCCTTCGCCACCGTGCGCGAGGCCGCCAAACGCACCCTGGGC CAGCGTCATTACGACGTGCAGCTGATGGGCGGGCTGGTTCTGCATGGCGGCAAGATCGCCGAGATGCGCACGGGCGAGGG AAAAACCCTGGTCGCCACCCTGCCGGTCTATCTGAACGCCCTGACCGGCAAGGGCGTTCACGTCGTCACGGTCAACGATT ATCTGGCCAAGCGCGATGCCGAGTGGATGGCGAAGGTTTACCGCTTCCTCGGCCTGACCGTCGGCGTCATCATCCATGAG CTTGATGACGGCGGCCGCCGCGCCGCTTACGCCTGCGACGTGACCTATGGCACCAACAACGAACTGGGCTTCGATTTCCT GCGCGATAATATGAAGTATCGCCTGGAGGACATGGTCCAGCGGCCCTTCGCCTATGCCATCGTCGACGAGGTCGACTCGA TCCTGATCGACGAGGCGCGCACGCCCTTGATCATCTCGGGTCAGGCCGAGGACAGCTCGGCCCTCTATCAGGCGGTCGAC AAGCTGATGCCGCGCTTGGTACCCGCCGATTACGAAAAGGACGAAAAGGCGCGCTCGGTCACCTATACCGAGGAAGGCTC CGATCACATCGAGGAACTGCTGCGCGAGGCCGGTCTGCTGGCCGAGGGCAATCTTTATGAAACCCGCAATGTGACGGCGC TTCACCACGCCACCCAGGGCCTGCGCGCCCATACCCTGTTCGAACGCGATGTCCATTACATGGTGCGCGACGACAAGGTG GTGATCATCGACGAGTTCACCGGCCGCGCCATGGAGGGGCGGCGCTTCTCCGATGGTCTGCATCAGGCCCTTGAAGCCAA GGAAGGCGTATCGATCCAGCCCGAGAACCAGACCCTGGCCTCGATCACCTTCCAGAACTATTTCCGCATGTATCCCAAGC TGTCGGGCATGACCGGCACGGCCTTGACCGAAGCCAACGAGTTCATGGAGATCTATGGGCTGGCGGTGGTCGAGATCCCG ACCAACCGGCCGATGATCCGCAAGGACAAGGACGACGAGGTCTATCGCACCTCGCGCGAGAAATACGAGGCGATCGCCAA GCAGATCGCCGAATGTCAGAAGCGCGGCCAGCCGGTGTTGGTCGGCACGACCTCGATCGAAAAATCGGAATATCTGGCCG AGCTGATGCGCACGACCACCAAGGTCAAGCCGCAGGTGCTCAACGCCCGTTACCACGAGCAGGAAGCCTTCATCATCGCC CAGGCCGGCGTTCCCGGGGCGGTGACCATCGCCACCAATATGGCCGGCCGCGGCACCGATATTCAGCTGGGCGGCAATCT TGATATGCGCATGGCCCGCGAACTGCCTGCCGACGCCACGCCCGAGCAGCGCGCCGCCAAGGAAGCCGAACTGCGCGCCG ACATCGAGAAGAAGAAGGCCCAGGCCCTGGCGGCCGGCGGCCTTTACGTGATCGGCACCGAGCGCCACGAAAGCCGGCGC ATCGACAACCAGCTGCGCGGCCGCACCGGGCGACAGGGCGATCCCGGCGGCTCGAGCTTCTATCTGTCGCTCGACGACGA CCTGATGCGGATCTTCGGCTCCGAGCGCATGGATAGCATGCTGCGCAAGCTGGGGCTGGAAGAGGGCGAGGCGATCGTCC ACCCCTGGGTCAACAAGGCCCTGGAAAAGGCCCAGCAGAAGGTCGAAGCCCGCAACTTCGACACCCGCAAGAACCTGCTG AAGTTCGACGACGTGATGAACGACCAGCGCAAGGTGGTCTACGAGCAGCGCCGCGATCTGATGGTGACCACCGATGTCTC CGAGACCGTGGCCGATATGCGCCAGGAAGTGATCGAAGACATCGTCCATGCCCATATCCCGCCCAAGGCGATGCCCGAGG AATGGGACAGCGCCGGGCTGGCCGAGGATGTGCGCCGGGTCTTCGGCCTTGATCTGCCGATCATCGACTGGGCCTCCGAG GATGGCATCGCCAACGAGGAGATCCTTGAGCGGCTGACCAAGGACGTCGAGGCCAAGATGGCGGCCAAGGAGGCCGAATA CGGCGCAGACGTGATGCGCATGGTTGAAAAGAGCCTGCTTTTGCAGATTCTCGACGGCATGTGGAAGGAGCACCTGCTTC ATCTCGAACATCTGCGCCAGGGTATTTCGCTGCGCGCCTTCGGCCAGCGCGATCCGCTGAACGAATACAAATCCGAATCC TTCGAGATGTTCCAGACCATGCTCTCGGATCTGCGCGAGCGGGTGACGATGACCTTGGCGAATGTGCAGTTGCGCATGGA TCCGCCGCCGCCGCCGCCCGAACCCCAGGGCTTTGCCGAGCACGTCGAACCCGAGCCGGCGATCGGCGGCGGTGGGGTGC CGGGCGTCGCCCCGGCGGCGACGGACCGCGAGGCCGGCCATCCCGAAACCTGGGGCAAGGTGGCGCGCAACGAGCTTTGC CCCTGCGGATCGGGCAAGAAGTACAAGCATTGCCACGGGGCGATGGGCTGA
Upstream 100 bases:
>100_bases AGGGAAGGTCCCTCGCTCTATCTCTTCGCCTCGGATCCCGGGCTTTCGTTTCCGTTCCGGGGGCCTTTGCCTGCCCGTCA CCCTGACCTTCGAGGTACGC
Downstream 100 bases:
>100_bases GGCCACGGGTTTTCCTTCGGCGGACCGCACAACAGGTGCGGCTTCGCCGAAGGGAACTGCCCCGAGCGGCCTTTTAGCCG GCTTTGCCTGTTGACCACCC
Product: preprotein translocase subunit SecA
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 896; Mature: 896
Protein sequence:
>896_residues MFGAIARRLFGSANDRIVKSLVKTVAAINAKESEVQGLSDADLAARTPWLKSRLAEGETLDDILVDAFATVREAAKRTLG QRHYDVQLMGGLVLHGGKIAEMRTGEGKTLVATLPVYLNALTGKGVHVVTVNDYLAKRDAEWMAKVYRFLGLTVGVIIHE LDDGGRRAAYACDVTYGTNNELGFDFLRDNMKYRLEDMVQRPFAYAIVDEVDSILIDEARTPLIISGQAEDSSALYQAVD KLMPRLVPADYEKDEKARSVTYTEEGSDHIEELLREAGLLAEGNLYETRNVTALHHATQGLRAHTLFERDVHYMVRDDKV VIIDEFTGRAMEGRRFSDGLHQALEAKEGVSIQPENQTLASITFQNYFRMYPKLSGMTGTALTEANEFMEIYGLAVVEIP TNRPMIRKDKDDEVYRTSREKYEAIAKQIAECQKRGQPVLVGTTSIEKSEYLAELMRTTTKVKPQVLNARYHEQEAFIIA QAGVPGAVTIATNMAGRGTDIQLGGNLDMRMARELPADATPEQRAAKEAELRADIEKKKAQALAAGGLYVIGTERHESRR IDNQLRGRTGRQGDPGGSSFYLSLDDDLMRIFGSERMDSMLRKLGLEEGEAIVHPWVNKALEKAQQKVEARNFDTRKNLL KFDDVMNDQRKVVYEQRRDLMVTTDVSETVADMRQEVIEDIVHAHIPPKAMPEEWDSAGLAEDVRRVFGLDLPIIDWASE DGIANEEILERLTKDVEAKMAAKEAEYGADVMRMVEKSLLLQILDGMWKEHLLHLEHLRQGISLRAFGQRDPLNEYKSES FEMFQTMLSDLRERVTMTLANVQLRMDPPPPPPEPQGFAEHVEPEPAIGGGGVPGVAPAATDREAGHPETWGKVARNELC PCGSGKKYKHCHGAMG
Sequences:
>Translated_896_residues MFGAIARRLFGSANDRIVKSLVKTVAAINAKESEVQGLSDADLAARTPWLKSRLAEGETLDDILVDAFATVREAAKRTLG QRHYDVQLMGGLVLHGGKIAEMRTGEGKTLVATLPVYLNALTGKGVHVVTVNDYLAKRDAEWMAKVYRFLGLTVGVIIHE LDDGGRRAAYACDVTYGTNNELGFDFLRDNMKYRLEDMVQRPFAYAIVDEVDSILIDEARTPLIISGQAEDSSALYQAVD KLMPRLVPADYEKDEKARSVTYTEEGSDHIEELLREAGLLAEGNLYETRNVTALHHATQGLRAHTLFERDVHYMVRDDKV VIIDEFTGRAMEGRRFSDGLHQALEAKEGVSIQPENQTLASITFQNYFRMYPKLSGMTGTALTEANEFMEIYGLAVVEIP TNRPMIRKDKDDEVYRTSREKYEAIAKQIAECQKRGQPVLVGTTSIEKSEYLAELMRTTTKVKPQVLNARYHEQEAFIIA QAGVPGAVTIATNMAGRGTDIQLGGNLDMRMARELPADATPEQRAAKEAELRADIEKKKAQALAAGGLYVIGTERHESRR IDNQLRGRTGRQGDPGGSSFYLSLDDDLMRIFGSERMDSMLRKLGLEEGEAIVHPWVNKALEKAQQKVEARNFDTRKNLL KFDDVMNDQRKVVYEQRRDLMVTTDVSETVADMRQEVIEDIVHAHIPPKAMPEEWDSAGLAEDVRRVFGLDLPIIDWASE DGIANEEILERLTKDVEAKMAAKEAEYGADVMRMVEKSLLLQILDGMWKEHLLHLEHLRQGISLRAFGQRDPLNEYKSES FEMFQTMLSDLRERVTMTLANVQLRMDPPPPPPEPQGFAEHVEPEPAIGGGGVPGVAPAATDREAGHPETWGKVARNELC PCGSGKKYKHCHGAMG >Mature_896_residues MFGAIARRLFGSANDRIVKSLVKTVAAINAKESEVQGLSDADLAARTPWLKSRLAEGETLDDILVDAFATVREAAKRTLG QRHYDVQLMGGLVLHGGKIAEMRTGEGKTLVATLPVYLNALTGKGVHVVTVNDYLAKRDAEWMAKVYRFLGLTVGVIIHE LDDGGRRAAYACDVTYGTNNELGFDFLRDNMKYRLEDMVQRPFAYAIVDEVDSILIDEARTPLIISGQAEDSSALYQAVD KLMPRLVPADYEKDEKARSVTYTEEGSDHIEELLREAGLLAEGNLYETRNVTALHHATQGLRAHTLFERDVHYMVRDDKV VIIDEFTGRAMEGRRFSDGLHQALEAKEGVSIQPENQTLASITFQNYFRMYPKLSGMTGTALTEANEFMEIYGLAVVEIP TNRPMIRKDKDDEVYRTSREKYEAIAKQIAECQKRGQPVLVGTTSIEKSEYLAELMRTTTKVKPQVLNARYHEQEAFIIA QAGVPGAVTIATNMAGRGTDIQLGGNLDMRMARELPADATPEQRAAKEAELRADIEKKKAQALAAGGLYVIGTERHESRR IDNQLRGRTGRQGDPGGSSFYLSLDDDLMRIFGSERMDSMLRKLGLEEGEAIVHPWVNKALEKAQQKVEARNFDTRKNLL KFDDVMNDQRKVVYEQRRDLMVTTDVSETVADMRQEVIEDIVHAHIPPKAMPEEWDSAGLAEDVRRVFGLDLPIIDWASE DGIANEEILERLTKDVEAKMAAKEAEYGADVMRMVEKSLLLQILDGMWKEHLLHLEHLRQGISLRAFGQRDPLNEYKSES FEMFQTMLSDLRERVTMTLANVQLRMDPPPPPPEPQGFAEHVEPEPAIGGGGVPGVAPAATDREAGHPETWGKVARNELC PCGSGKKYKHCHGAMG
Specific function: Part of the Sec protein translocase complex. Interacts with the secYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the pr
COG id: COG0653
COG function: function code U; Preprotein translocase subunit SecA (ATPase, RNA helicase)
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side. Cytoplasm (By similarity). Note=Distribution is 50-50 (By similarity)
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the secA family
Homologues:
Organism=Escherichia coli, GI1786287, Length=911, Percent_Identity=54.1163556531284, Blast_Score=939, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): SECA_RHORT (Q2RXV5)
Other databases:
- EMBL: CP000230 - RefSeq: YP_425327.2 - ProteinModelPortal: Q2RXV5 - SMR: Q2RXV5 - STRING: Q2RXV5 - GeneID: 3834629 - GenomeReviews: CP000230_GR - KEGG: rru:Rru_A0235 - NMPDR: fig|1085.1.peg.1509 - eggNOG: COG0653 - HOGENOM: HBG284200 - ProtClustDB: PRK12904 - BioCyc: RRUB269796:RRU_A0235-MONOMER - GO: GO:0005737 - HAMAP: MF_01382 - InterPro: IPR004027 - InterPro: IPR000185 - InterPro: IPR020937 - InterPro: IPR011115 - InterPro: IPR014018 - InterPro: IPR011130 - InterPro: IPR011116 - Gene3D: G3DSA:1.10.3060.10 - PRINTS: PR00906 - SMART: SM00957 - SMART: SM00958 - TIGRFAMs: TIGR00963
Pfam domain/function: PF02810 SEC-C; PF07517 SecA_DEAD; PF01043 SecA_PP_bind; PF07516 SecA_SW; SSF81767 SecA_PP_bd; SSF81886 SecA_SW
EC number: NA
Molecular weight: Translated: 100042; Mature: 100042
Theoretical pI: Translated: 5.20; Mature: 5.20
Prosite motif: PS01312 SECA; PS51196 SECA_MOTOR_DEAD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFGAIARRLFGSANDRIVKSLVKTVAAINAKESEVQGLSDADLAARTPWLKSRLAEGETL CHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHCCHHHHHHHCCCCCH DDILVDAFATVREAAKRTLGQRHYDVQLMGGLVLHGGKIAEMRTGEGKTLVATLPVYLNA HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEECCCEEEEEECCCCCEEEEEHHHHHHH LTGKGVHVVTVNDYLAKRDAEWMAKVYRFLGLTVGVIIHELDDGGRRAAYACDVTYGTNN HCCCCEEEEEECHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCC ELGFDFLRDNMKYRLEDMVQRPFAYAIVDEVDSILIDEARTPLIISGQAEDSSALYQAVD CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHH KLMPRLVPADYEKDEKARSVTYTEEGSDHIEELLREAGLLAEGNLYETRNVTALHHATQG HHHHHCCCCCCCCCHHHCCCEECCCCHHHHHHHHHHCCCEECCCEECCCCCHHHHHHHHC LRAHTLFERDVHYMVRDDKVVIIDEFTGRAMEGRRFSDGLHQALEAKEGVSIQPENQTLA HHHHHHHHHHHHEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHH SITFQNYFRMYPKLSGMTGTALTEANEFMEIYGLAVVEIPTNRPMIRKDKDDEVYRTSRE HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCCCHHHHHHHH KYEAIAKQIAECQKRGQPVLVGTTSIEKSEYLAELMRTTTKVKPQVLNARYHEQEAFIIA HHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHCCHHHHCCHHCCCCEEEEE QAGVPGAVTIATNMAGRGTDIQLGGNLDMRMARELPADATPEQRAAKEAELRADIEKKKA ECCCCCEEEEEECCCCCCCEEEECCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH QALAAGGLYVIGTERHESRRIDNQLRGRTGRQGDPGGSSFYLSLDDDLMRIFGSERMDSM HHHHCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCEEEEECCHHHHHHHCHHHHHHH LRKLGLEEGEAIVHPWVNKALEKAQQKVEARNFDTRKNLLKFDDVMNDQRKVVYEQRRDL HHHCCCCCCCEEECHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCHHHHHHHHHHCCE MVTTDVSETVADMRQEVIEDIVHAHIPPKAMPEEWDSAGLAEDVRRVFGLDLPIIDWASE EEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEECCCC DGIANEEILERLTKDVEAKMAAKEAEYGADVMRMVEKSLLLQILDGMWKEHLLHLEHLRQ CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GISLRAFGQRDPLNEYKSESFEMFQTMLSDLRERVTMTLANVQLRMDPPPPPPEPQGFAE CCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCHHH HVEPEPAIGGGGVPGVAPAATDREAGHPETWGKVARNELCPCGSGKKYKHCHGAMG CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MFGAIARRLFGSANDRIVKSLVKTVAAINAKESEVQGLSDADLAARTPWLKSRLAEGETL CHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHCCHHHHHHHCCCCCH DDILVDAFATVREAAKRTLGQRHYDVQLMGGLVLHGGKIAEMRTGEGKTLVATLPVYLNA HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEECCCEEEEEECCCCCEEEEEHHHHHHH LTGKGVHVVTVNDYLAKRDAEWMAKVYRFLGLTVGVIIHELDDGGRRAAYACDVTYGTNN HCCCCEEEEEECHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCC ELGFDFLRDNMKYRLEDMVQRPFAYAIVDEVDSILIDEARTPLIISGQAEDSSALYQAVD CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHH KLMPRLVPADYEKDEKARSVTYTEEGSDHIEELLREAGLLAEGNLYETRNVTALHHATQG HHHHHCCCCCCCCCHHHCCCEECCCCHHHHHHHHHHCCCEECCCEECCCCCHHHHHHHHC LRAHTLFERDVHYMVRDDKVVIIDEFTGRAMEGRRFSDGLHQALEAKEGVSIQPENQTLA HHHHHHHHHHHHEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHH SITFQNYFRMYPKLSGMTGTALTEANEFMEIYGLAVVEIPTNRPMIRKDKDDEVYRTSRE HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCCCHHHHHHHH KYEAIAKQIAECQKRGQPVLVGTTSIEKSEYLAELMRTTTKVKPQVLNARYHEQEAFIIA HHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHCCHHHHCCHHCCCCEEEEE QAGVPGAVTIATNMAGRGTDIQLGGNLDMRMARELPADATPEQRAAKEAELRADIEKKKA ECCCCCEEEEEECCCCCCCEEEECCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH QALAAGGLYVIGTERHESRRIDNQLRGRTGRQGDPGGSSFYLSLDDDLMRIFGSERMDSM HHHHCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCEEEEECCHHHHHHHCHHHHHHH LRKLGLEEGEAIVHPWVNKALEKAQQKVEARNFDTRKNLLKFDDVMNDQRKVVYEQRRDL HHHCCCCCCCEEECHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCHHHHHHHHHHCCE MVTTDVSETVADMRQEVIEDIVHAHIPPKAMPEEWDSAGLAEDVRRVFGLDLPIIDWASE EEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEECCCC DGIANEEILERLTKDVEAKMAAKEAEYGADVMRMVEKSLLLQILDGMWKEHLLHLEHLRQ CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GISLRAFGQRDPLNEYKSESFEMFQTMLSDLRERVTMTLANVQLRMDPPPPPPEPQGFAE CCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCHHH HVEPEPAIGGGGVPGVAPAATDREAGHPETWGKVARNELCPCGSGKKYKHCHGAMG CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA