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The map label for this gene is dnaQ [H]

Identifier: 83312383

GI number: 83312383

Start: 3560743

End: 3561390

Strand: Reverse

Name: dnaQ [H]

Synonym: amb3284

Alternate gene names: 83312383

Gene position: 3561390-3560743 (Counterclockwise)

Preceding gene: 83312384

Following gene: 83312378

Centisome position: 71.7

GC content: 62.81

Gene sequence:

>648_bases
ATGCTGTCCCTCGACGATTTGGCCACCACTTCGCGGATTGTCGCCATCGATGCCGAGACCACGGGGTTCAAGGTCCCGAC
CCCGGCCGAGATCAAGAAGATGCCCAAGGGGCTGCGCCTGCCCGGCGTGGTCATCGAAATCGGCTGCCTGGAACTGGTCC
GTGGCGACGAGGGGTGGAAGACCGGCGAAAGCTGGCAGCGCCGCCTCCAGCCCGGCGGCCCCATCTCCAAGGCGTCCATC
GATGTCCATGGAATCAGCCCGGCCGAGCTGAAGACTGCGCCGTCGTTCCGCGACGTCCTCGACGATTTTGAGGCCTTCAT
CGGACAGGACGCGCTGTTGGCTCACAGCGCCGAGAACGAGATGGAGTTTCTCAATTTCGAGTATGCCAGGGCCGGGCGTT
GCGGCTTTGACGAGATGATCTTCGGCGACGGGGATTTCGTCTGTACCCAGGAACTGTCCCGGCAGTTCTTTCCGGGCGTG
CCCGGTTCACTGGACGTGCTGTGCGATCGCCTGTGGGTCGACCGCTCCGACCGGTTCGAACATCATGGGGCGCTGCTCGA
TGCGATTCTGACGGCCGAAGCCTTCATGAAGATGGCCGGCGGCTTCGTCCAGGACGATACCCGCTATATGAGCTTTGGGG
ATCAGTAG

Upstream 100 bases:

>100_bases
CGCTGATGGACCTTCGGTTCTTCACGCCTGCCGCACCGGTCGAGCGCGGCGATGACCGGTTCTGAGCGTTTCCCTCGCAT
TCTTTCAGGAATTGACCGCC

Downstream 100 bases:

>100_bases
GGGGGCGCCAGGGTGGATCGCCCGTCCCCAAAATAAACACGGCCGGCATTCGCAAGAATGCCGGCCGTGTCATTTGAAGG
CTTAGAGGACCTTCAGATTG

Product: DNA polymerase III, epsilon subunit and related 3'-5' exonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MLSLDDLATTSRIVAIDAETTGFKVPTPAEIKKMPKGLRLPGVVIEIGCLELVRGDEGWKTGESWQRRLQPGGPISKASI
DVHGISPAELKTAPSFRDVLDDFEAFIGQDALLAHSAENEMEFLNFEYARAGRCGFDEMIFGDGDFVCTQELSRQFFPGV
PGSLDVLCDRLWVDRSDRFEHHGALLDAILTAEAFMKMAGGFVQDDTRYMSFGDQ

Sequences:

>Translated_215_residues
MLSLDDLATTSRIVAIDAETTGFKVPTPAEIKKMPKGLRLPGVVIEIGCLELVRGDEGWKTGESWQRRLQPGGPISKASI
DVHGISPAELKTAPSFRDVLDDFEAFIGQDALLAHSAENEMEFLNFEYARAGRCGFDEMIFGDGDFVCTQELSRQFFPGV
PGSLDVLCDRLWVDRSDRFEHHGALLDAILTAEAFMKMAGGFVQDDTRYMSFGDQ
>Mature_215_residues
MLSLDDLATTSRIVAIDAETTGFKVPTPAEIKKMPKGLRLPGVVIEIGCLELVRGDEGWKTGESWQRRLQPGGPISKASI
DVHGISPAELKTAPSFRDVLDDFEAFIGQDALLAHSAENEMEFLNFEYARAGRCGFDEMIFGDGDFVCTQELSRQFFPGV
PGSLDVLCDRLWVDRSDRFEHHGALLDAILTAEAFMKMAGGFVQDDTRYMSFGDQ

Specific function: DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease [H]

COG id: COG0847

COG function: function code L; DNA polymerase III, epsilon subunit and related 3'-5' exonucleases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786409, Length=191, Percent_Identity=31.9371727748691, Blast_Score=85, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006054
- InterPro:   IPR006309
- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00929 Exonuc_X-T [H]

EC number: =2.7.7.7 [H]

Molecular weight: Translated: 23741; Mature: 23741

Theoretical pI: Translated: 4.36; Mature: 4.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSLDDLATTSRIVAIDAETTGFKVPTPAEIKKMPKGLRLPGVVIEIGCLELVRGDEGWK
CCCCHHHCCCCEEEEEECCCCCCCCCCCHHHHHCCCCCCCCCEEEEHHHHHHHCCCCCCC
TGESWQRRLQPGGPISKASIDVHGISPAELKTAPSFRDVLDDFEAFIGQDALLAHSAENE
CCHHHHHHCCCCCCCCCCEEEEECCCHHHHCCCCCHHHHHHHHHHHHCCCHHHHHCCCCC
MEFLNFEYARAGRCGFDEMIFGDGDFVCTQELSRQFFPGVPGSLDVLCDRLWVDRSDRFE
HHHHHHHHHHCCCCCCCCEEECCCCEEEHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHH
HHGALLDAILTAEAFMKMAGGFVQDDTRYMSFGDQ
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCC
>Mature Secondary Structure
MLSLDDLATTSRIVAIDAETTGFKVPTPAEIKKMPKGLRLPGVVIEIGCLELVRGDEGWK
CCCCHHHCCCCEEEEEECCCCCCCCCCCHHHHHCCCCCCCCCEEEEHHHHHHHCCCCCCC
TGESWQRRLQPGGPISKASIDVHGISPAELKTAPSFRDVLDDFEAFIGQDALLAHSAENE
CCHHHHHHCCCCCCCCCCEEEEECCCHHHHCCCCCHHHHHHHHHHHHCCCHHHHHCCCCC
MEFLNFEYARAGRCGFDEMIFGDGDFVCTQELSRQFFPGVPGSLDVLCDRLWVDRSDRFE
HHHHHHHHHHCCCCCCCCEEECCCCEEEHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHH
HHGALLDAILTAEAFMKMAGGFVQDDTRYMSFGDQ
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]