Click here to switch to the map view.

The map label for this gene is ybgF [C]

Identifier: 83312307

GI number: 83312307

Start: 3476227

End: 3477294

Strand: Reverse

Name: ybgF [C]

Synonym: amb3208

Alternate gene names: 83312307

Gene position: 3477294-3476227 (Counterclockwise)

Preceding gene: 83312308

Following gene: 83312306

Centisome position: 70.01

GC content: 66.57

Gene sequence:

>1068_bases
TTGCGCCCATGGGAAAGTCATTCTTCCGCATCCGTTTCGAAGATGAGGTTGGTCGTGCGCCGTTTCGTCCTTTCCACCGC
CTTGTCGGCCCTGCTGATCGGCGCGGCCTTCGTGTCCCCCGCTTCGGCGCAGAGCGATACCCGCGCTCTTTACGATCGCA
TCGAACGTCTTGAACGCGACCTGATGACGCTCCAGTCCCAGTCGGCGCGGGGCGGCTCCACCGTGGTGCGCTCGTCCGCC
AATGACGGCAGCGTCTCGGGCAGCGCCGCGTCGCGCCTGGAGGACCGGATCAACGAGCTGGAGGACGCCAACCGCTTCCT
CACCGGCAAGATCGAGGAAGCCAATTTCAAGGCGGCCCAGTTGAACAAGCAGCTGGAGCGCATGCAGGCCGATATCGATC
TGCGCTTCAAGGATCTGGAGGGGGGCAAGGGCGGCTCGTCCTCGTCCGCCCAGCCGCAATCCATGTCCATGCCGGCGGCT
TCGGCCCCGGCCACCACGCCCAGCGGCGCGCCGGTGCTGATTCCGCCCAAGGGCGTCAAGCCAGGGGCCAACTCCGCCGA
CAATGACGGCCCGGCGCCGGGCCCGCAGAATCTGGGCGCCATGCCCGCCGGTGCCTTGAAGAAGGGCGAGGCCGAGGCGC
AGGCCCAGGCCGCCAAGGCGCCGCCTGCCGCCCCCAAGGACGCCCAGTCCGCCTATGAGGAGGCCTATGGTCTGGCCCAG
AAGGGCGATTACGACGGGGCCGAGCAGGGATTCCGGTCCTTCCTCAAGACCTATCCCAACCATCAGCTGGCCGGCAACGC
CCAGTACTGGCTGGGCGACATCGCCTTCTCCCAGCGCAAGGACTTCGCCACCTCGGCCAAGCTATTCGGCGAGGCCTACA
AGAAGTACCCCAAGCACACCAAGGCTCCCGACATGCTGTACAAGCTGGGCGCTTCGTTCGGCCACCTGGACATGAAGGAT
CAGGCGTGCCGCACCTATGCCCTGCTGTTCGCCGAGCATCCCGACATGGCCGACCGCATCAAGCGCGCCGCCACCGGGGA
CAAGCAGCGTTTGGGCTGCGGCAAATAG

Upstream 100 bases:

>100_bases
GTAGCAATGACTTGGCATGGGCGCAAAGCCGTCGGGCCGTGACCGTACTTGAGTAGGGCCGGGCGAGGGCCTGAACGAAA
TCAGGGGATCGCCTCTTGCC

Downstream 100 bases:

>100_bases
GGGGGATATCGGGCTGCCGCCCGAACCCGCTTGGGGCCTTGGACCCCAAACCCCATTCCTGAAATAAAATGGGGTCCGGG
GCATTGGCCCCGGATGGGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 355; Mature: 355

Protein sequence:

>355_residues
MRPWESHSSASVSKMRLVVRRFVLSTALSALLIGAAFVSPASAQSDTRALYDRIERLERDLMTLQSQSARGGSTVVRSSA
NDGSVSGSAASRLEDRINELEDANRFLTGKIEEANFKAAQLNKQLERMQADIDLRFKDLEGGKGGSSSSAQPQSMSMPAA
SAPATTPSGAPVLIPPKGVKPGANSADNDGPAPGPQNLGAMPAGALKKGEAEAQAQAAKAPPAAPKDAQSAYEEAYGLAQ
KGDYDGAEQGFRSFLKTYPNHQLAGNAQYWLGDIAFSQRKDFATSAKLFGEAYKKYPKHTKAPDMLYKLGASFGHLDMKD
QACRTYALLFAEHPDMADRIKRAATGDKQRLGCGK

Sequences:

>Translated_355_residues
MRPWESHSSASVSKMRLVVRRFVLSTALSALLIGAAFVSPASAQSDTRALYDRIERLERDLMTLQSQSARGGSTVVRSSA
NDGSVSGSAASRLEDRINELEDANRFLTGKIEEANFKAAQLNKQLERMQADIDLRFKDLEGGKGGSSSSAQPQSMSMPAA
SAPATTPSGAPVLIPPKGVKPGANSADNDGPAPGPQNLGAMPAGALKKGEAEAQAQAAKAPPAAPKDAQSAYEEAYGLAQ
KGDYDGAEQGFRSFLKTYPNHQLAGNAQYWLGDIAFSQRKDFATSAKLFGEAYKKYPKHTKAPDMLYKLGASFGHLDMKD
QACRTYALLFAEHPDMADRIKRAATGDKQRLGCGK
>Mature_355_residues
MRPWESHSSASVSKMRLVVRRFVLSTALSALLIGAAFVSPASAQSDTRALYDRIERLERDLMTLQSQSARGGSTVVRSSA
NDGSVSGSAASRLEDRINELEDANRFLTGKIEEANFKAAQLNKQLERMQADIDLRFKDLEGGKGGSSSSAQPQSMSMPAA
SAPATTPSGAPVLIPPKGVKPGANSADNDGPAPGPQNLGAMPAGALKKGEAEAQAQAAKAPPAAPKDAQSAYEEAYGLAQ
KGDYDGAEQGFRSFLKTYPNHQLAGNAQYWLGDIAFSQRKDFATSAKLFGEAYKKYPKHTKAPDMLYKLGASFGHLDMKD
QACRTYALLFAEHPDMADRIKRAATGDKQRLGCGK

Specific function: Unknown

COG id: COG1729

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ybgF [H]

Homologues:

Organism=Escherichia coli, GI1786963, Length=230, Percent_Identity=27.8260869565217, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014162
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37889; Mature: 37889

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPWESHSSASVSKMRLVVRRFVLSTALSALLIGAAFVSPASAQSDTRALYDRIERLERD
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
LMTLQSQSARGGSTVVRSSANDGSVSGSAASRLEDRINELEDANRFLTGKIEEANFKAAQ
HHHHHHHCCCCCCHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
LNKQLERMQADIDLRFKDLEGGKGGSSSSAQPQSMSMPAASAPATTPSGAPVLIPPKGVK
HHHHHHHHHHHHCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCC
PGANSADNDGPAPGPQNLGAMPAGALKKGEAEAQAQAAKAPPAAPKDAQSAYEEAYGLAQ
CCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHH
KGDYDGAEQGFRSFLKTYPNHQLAGNAQYWLGDIAFSQRKDFATSAKLFGEAYKKYPKHT
CCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
KAPDMLYKLGASFGHLDMKDQACRTYALLFAEHPDMADRIKRAATGDKQRLGCGK
CCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHCCCCC
>Mature Secondary Structure
MRPWESHSSASVSKMRLVVRRFVLSTALSALLIGAAFVSPASAQSDTRALYDRIERLERD
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
LMTLQSQSARGGSTVVRSSANDGSVSGSAASRLEDRINELEDANRFLTGKIEEANFKAAQ
HHHHHHHCCCCCCHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
LNKQLERMQADIDLRFKDLEGGKGGSSSSAQPQSMSMPAASAPATTPSGAPVLIPPKGVK
HHHHHHHHHHHHCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCC
PGANSADNDGPAPGPQNLGAMPAGALKKGEAEAQAQAAKAPPAAPKDAQSAYEEAYGLAQ
CCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHH
KGDYDGAEQGFRSFLKTYPNHQLAGNAQYWLGDIAFSQRKDFATSAKLFGEAYKKYPKHT
CCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
KAPDMLYKLGASFGHLDMKDQACRTYALLFAEHPDMADRIKRAATGDKQRLGCGK
CCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12534463 [H]