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The map label for this gene is omp16 [H]

Identifier: 83312308

GI number: 83312308

Start: 3477339

End: 3477827

Strand: Reverse

Name: omp16 [H]

Synonym: amb3209

Alternate gene names: 83312308

Gene position: 3477827-3477339 (Counterclockwise)

Preceding gene: 83312309

Following gene: 83312307

Centisome position: 70.02

GC content: 58.69

Gene sequence:

>489_bases
ATGGCTTTGATCAGGAATAATGTGGCAGTGATCGCGCTGCTTCTGCTGGTTGCCGCCTGTGAATCGGCCCCCCAGTCCAT
GTCGGTGGCCTGTGTCGGCACGCCGCCAGCACTTCCGGACACCAGGTATCTGCCTGGTTCGCCTGGTGATTTTGTCACTA
ATATCGGTGACCGGGTCTTTTTCGATACGAACAGCTCGGCTCTTCGTTCAGATGCCCTCGCCACCCTGACCAGGCAGGCA
GTCTGGTTGAGGGCCTACCCCAATTACCAATTGACCGTCGAGGGGCACGCCGATGAGCGCGGCACTCGCGAATACAATCT
TGGTCTCGGTGACCGCCGCGCCCACGCGGTAAAAAGATTTCTGATCGCCCAAGGTGTGGCTCAGGCCAGGCTCAAGATAA
TTTCGTGGGGCAAGGAGCGTCCCGTGGCATTTGGTAGCAATGACTTGGCATGGGCGCAAAGCCGTCGGGCCGTGACCGTA
CTTGAGTAG

Upstream 100 bases:

>100_bases
CGAAAAGAATGGGGCGCCCGCCCCCTGCTTCGGCAGGGGCGGGCGCCTTATTTTTGCCTGAATCGTGCTTGATGCTTTCT
CACTCATCAGGGTGGGGAGA

Downstream 100 bases:

>100_bases
GGCCGGGCGAGGGCCTGAACGAAATCAGGGGATCGCCTCTTGCCTTGCGCCCATGGGAAAGTCATTCTTCCGCATCCGTT
TCGAAGATGAGGTTGGTCGT

Product: Outer membrane protein and related peptidoglycan-associated lipo protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 162; Mature: 161

Protein sequence:

>162_residues
MALIRNNVAVIALLLLVAACESAPQSMSVACVGTPPALPDTRYLPGSPGDFVTNIGDRVFFDTNSSALRSDALATLTRQA
VWLRAYPNYQLTVEGHADERGTREYNLGLGDRRAHAVKRFLIAQGVAQARLKIISWGKERPVAFGSNDLAWAQSRRAVTV
LE

Sequences:

>Translated_162_residues
MALIRNNVAVIALLLLVAACESAPQSMSVACVGTPPALPDTRYLPGSPGDFVTNIGDRVFFDTNSSALRSDALATLTRQA
VWLRAYPNYQLTVEGHADERGTREYNLGLGDRRAHAVKRFLIAQGVAQARLKIISWGKERPVAFGSNDLAWAQSRRAVTV
LE
>Mature_161_residues
ALIRNNVAVIALLLLVAACESAPQSMSVACVGTPPALPDTRYLPGSPGDFVTNIGDRVFFDTNSSALRSDALATLTRQAV
WLRAYPNYQLTVEGHADERGTREYNLGLGDRRAHAVKRFLIAQGVAQARLKIISWGKERPVAFGSNDLAWAQSRRAVTVL
E

Specific function: Thought To Play A Role In Bacterial Envelope Integrity. Very Strongly Associated With The Peptidoglycan. [C]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=102, Percent_Identity=49.0196078431373, Blast_Score=112, Evalue=1e-26,
Organism=Escherichia coli, GI48994946, Length=107, Percent_Identity=33.6448598130841, Blast_Score=66, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 17622; Mature: 17491

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALIRNNVAVIALLLLVAACESAPQSMSVACVGTPPALPDTRYLPGSPGDFVTNIGDRVF
CCEECCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHCCCCEEE
FDTNSSALRSDALATLTRQAVWLRAYPNYQLTVEGHADERGTREYNLGLGDRRAHAVKRF
EECCCHHHHHHHHHHHHHHEEEEEECCCEEEEEECCCCCCCCEEEECCCCCHHHHHHHHH
LIAQGVAQARLKIISWGKERPVAFGSNDLAWAQSRRAVTVLE
HHHHHHHHHHHHHEECCCCCCEEECCCCCCHHCCCCEEEEEC
>Mature Secondary Structure 
ALIRNNVAVIALLLLVAACESAPQSMSVACVGTPPALPDTRYLPGSPGDFVTNIGDRVF
CEECCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHCCCCEEE
FDTNSSALRSDALATLTRQAVWLRAYPNYQLTVEGHADERGTREYNLGLGDRRAHAVKRF
EECCCHHHHHHHHHHHHHHEEEEEECCCEEEEEECCCCCCCCEEEECCCCCHHHHHHHHH
LIAQGVAQARLKIISWGKERPVAFGSNDLAWAQSRRAVTVLE
HHHHHHHHHHHHHEECCCCCCEEECCCCCCHHCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11214968 [H]