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The map label for this gene is nifU [H]

Identifier: 83312126

GI number: 83312126

Start: 3269590

End: 3269970

Strand: Reverse

Name: nifU [H]

Synonym: amb3027

Alternate gene names: 83312126

Gene position: 3269970-3269590 (Counterclockwise)

Preceding gene: 83312127

Following gene: 83312125

Centisome position: 65.83

GC content: 61.94

Gene sequence:

>381_bases
ATGGCTTACAGCGACAAGGTTATCGACCACTACGAGCATCCCCGCAACGTGGGTGCCCTGGACAAGGACGATTCCGCGGT
CGGCACCGGTCTGGTGGGCGCGCCCGCCTGCGGCGACGTGATGAAGCTGCAGATCAAGGTCAGCGCCGAAGGCATCATCG
AGGACGCCAAGTTCAAGACCTTCGGTTGCGGCTCGGCGATCGCCTCCAGCTCCTTGGTGACCGAGTGGGTGAAGGGCAAG
ACCCTGGACGAAGCGGCCAGCATCAAGAACACCGACATCGCCCATGAACTGGCCCTGCCGCCGGTCAAGATCCATTGTTC
GGTGTTGGCCGAGGATGCTATCAAGGCCGCCATCGCCGACTACAAGAAGAAGTCGGGCTGA

Upstream 100 bases:

>100_bases
TCGAATGGGCTGAGCATTGAGGAAAAGGATGGGCATTTCGGTACCGAAATGCCTTAGAATGATTCCGAGCTAAGGCTCGG
CCGGACTTTTGGAGGACGTT

Downstream 100 bases:

>100_bases
CGGCTCCGGACGGTTTGACGAGAAGAGGGGAAGACCATGGCACCTGCTCCCATGACCATCACCGACGCCGCCGCCGAGCG
GGTCAAGGTCCTGCTGGAAA

Product: scaffold protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 125

Protein sequence:

>126_residues
MAYSDKVIDHYEHPRNVGALDKDDSAVGTGLVGAPACGDVMKLQIKVSAEGIIEDAKFKTFGCGSAIASSSLVTEWVKGK
TLDEAASIKNTDIAHELALPPVKIHCSVLAEDAIKAAIADYKKKSG

Sequences:

>Translated_126_residues
MAYSDKVIDHYEHPRNVGALDKDDSAVGTGLVGAPACGDVMKLQIKVSAEGIIEDAKFKTFGCGSAIASSSLVTEWVKGK
TLDEAASIKNTDIAHELALPPVKIHCSVLAEDAIKAAIADYKKKSG
>Mature_125_residues
AYSDKVIDHYEHPRNVGALDKDDSAVGTGLVGAPACGDVMKLQIKVSAEGIIEDAKFKTFGCGSAIASSSLVTEWVKGKT
LDEAASIKNTDIAHELALPPVKIHCSVLAEDAIKAAIADYKKKSG

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

Organism=Homo sapiens, GI56699456, Length=123, Percent_Identity=77.2357723577236, Blast_Score=200, Evalue=3e-52,
Organism=Homo sapiens, GI24307953, Length=122, Percent_Identity=77.0491803278689, Blast_Score=196, Evalue=3e-51,
Organism=Escherichia coli, GI1788878, Length=124, Percent_Identity=83.0645161290323, Blast_Score=219, Evalue=5e-59,
Organism=Caenorhabditis elegans, GI17543474, Length=123, Percent_Identity=72.3577235772358, Blast_Score=192, Evalue=3e-50,
Organism=Saccharomyces cerevisiae, GI6325122, Length=123, Percent_Identity=75.609756097561, Blast_Score=192, Evalue=1e-50,
Organism=Saccharomyces cerevisiae, GI6324800, Length=123, Percent_Identity=72.3577235772358, Blast_Score=184, Evalue=4e-48,
Organism=Drosophila melanogaster, GI21355597, Length=123, Percent_Identity=77.2357723577236, Blast_Score=201, Evalue=1e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011339
- InterPro:   IPR002871 [H]

Pfam domain/function: PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 13228; Mature: 13097

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYSDKVIDHYEHPRNVGALDKDDSAVGTGLVGAPACGDVMKLQIKVSAEGIIEDAKFKT
CCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCC
FGCGSAIASSSLVTEWVKGKTLDEAASIKNTDIAHELALPPVKIHCSVLAEDAIKAAIAD
CCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCCHHHHCCCCEEEHHHHHHHHHHHHHHHH
YKKKSG
HHHCCC
>Mature Secondary Structure 
AYSDKVIDHYEHPRNVGALDKDDSAVGTGLVGAPACGDVMKLQIKVSAEGIIEDAKFKT
CCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCC
FGCGSAIASSSLVTEWVKGKTLDEAASIKNTDIAHELALPPVKIHCSVLAEDAIKAAIAD
CCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCCHHHHCCCCEEEHHHHHHHHHHHHHHHH
YKKKSG
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]