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The map label for this gene is 83311279

Identifier: 83311279

GI number: 83311279

Start: 2363669

End: 2364274

Strand: Reverse

Name: 83311279

Synonym: amb2180

Alternate gene names: NA

Gene position: 2364274-2363669 (Counterclockwise)

Preceding gene: 83311280

Following gene: 83311278

Centisome position: 47.6

GC content: 58.09

Gene sequence:

>606_bases
ATGCCAGTAGCGACACGGGCGTCGCTCATGACGCGGCTCCTGCTCATGTTTATCCGACATCAAGATGGGCGAAGCCATCC
TCGTAAGGAAAAGACCACCATGCCGCCACGTAAGAGTTCCAAACCCGCAACCGCCCCCGAGCCTGCCAAGGTCGCCAAGA
AGGCTGGTCGGTCCACCAGAGGACGCTTGGACGACGGCAGTGCCAATCCCATCGATGTCCATGTTGGTGCCCGCATTCGG
CTTCGCCGGACCCTGCTTGGAATGAGCCAGGAGAAGCTTGGAGAATGCCTGGGGCTGACCTTCCAGCAGGTCCAGAAGTA
CGAACGTGGAGCCAATCGGGTCGGAGCATCCAGGCTGTTCGATCTATCCCGTGTTCTGGATGTCCGGGTTGGCTACTTTT
TTGAGGAAATCTCTTCGACTGCCCAGGCAGCATCGCCGGTCGAGGTGATCCGGGGCAATGTCACCAAGGCAATCGATGTC
GCTGACGACAATCCCATGACAAAGCGGGAAACCCTCGAATTGGTACGGGCCTATTTCAGCATCAGTGACCCCAAGGTCCG
GGATCAGGTTCTGTCGATGGCGAAGGCTTTGGGTGGTGCCAATTAG

Upstream 100 bases:

>100_bases
CCCATGGTTGCTCCAAACTATGCTGCTCACCGATCAAGAATGGCCGTAAAATTTGGGCTTGGAATTTCTCGACATAAACC
AAAATCAGAAACGATTCCCG

Downstream 100 bases:

>100_bases
TATGGTTAGATTATTACACGGGAAAAACTATTTTTTCGATCTCTTGCTTTAAATGGCTTACGGGTATCCCCTTCTTATAG
CGTTCATCCGCCGACTTAGA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 201; Mature: 200

Protein sequence:

>201_residues
MPVATRASLMTRLLLMFIRHQDGRSHPRKEKTTMPPRKSSKPATAPEPAKVAKKAGRSTRGRLDDGSANPIDVHVGARIR
LRRTLLGMSQEKLGECLGLTFQQVQKYERGANRVGASRLFDLSRVLDVRVGYFFEEISSTAQAASPVEVIRGNVTKAIDV
ADDNPMTKRETLELVRAYFSISDPKVRDQVLSMAKALGGAN

Sequences:

>Translated_201_residues
MPVATRASLMTRLLLMFIRHQDGRSHPRKEKTTMPPRKSSKPATAPEPAKVAKKAGRSTRGRLDDGSANPIDVHVGARIR
LRRTLLGMSQEKLGECLGLTFQQVQKYERGANRVGASRLFDLSRVLDVRVGYFFEEISSTAQAASPVEVIRGNVTKAIDV
ADDNPMTKRETLELVRAYFSISDPKVRDQVLSMAKALGGAN
>Mature_200_residues
PVATRASLMTRLLLMFIRHQDGRSHPRKEKTTMPPRKSSKPATAPEPAKVAKKAGRSTRGRLDDGSANPIDVHVGARIRL
RRTLLGMSQEKLGECLGLTFQQVQKYERGANRVGASRLFDLSRVLDVRVGYFFEEISSTAQAASPVEVIRGNVTKAIDVA
DDNPMTKRETLELVRAYFSISDPKVRDQVLSMAKALGGAN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 22174; Mature: 22043

Theoretical pI: Translated: 11.08; Mature: 11.08

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVATRASLMTRLLLMFIRHQDGRSHPRKEKTTMPPRKSSKPATAPEPAKVAKKAGRSTR
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCC
GRLDDGSANPIDVHVGARIRLRRTLLGMSQEKLGECLGLTFQQVQKYERGANRVGASRLF
CCCCCCCCCCEEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DLSRVLDVRVGYFFEEISSTAQAASPVEVIRGNVTKAIDVADDNPMTKRETLELVRAYFS
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHEEECCCCCCCHHHHHHHHHHHHHC
ISDPKVRDQVLSMAKALGGAN
CCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PVATRASLMTRLLLMFIRHQDGRSHPRKEKTTMPPRKSSKPATAPEPAKVAKKAGRSTR
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCC
GRLDDGSANPIDVHVGARIRLRRTLLGMSQEKLGECLGLTFQQVQKYERGANRVGASRLF
CCCCCCCCCCEEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DLSRVLDVRVGYFFEEISSTAQAASPVEVIRGNVTKAIDVADDNPMTKRETLELVRAYFS
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHEEECCCCCCCHHHHHHHHHHHHHC
ISDPKVRDQVLSMAKALGGAN
CCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8868435 [H]