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The map label for this gene is yjcC [H]

Identifier: 83310014

GI number: 83310014

Start: 983699

End: 984304

Strand: Reverse

Name: yjcC [H]

Synonym: amb0915

Alternate gene names: 83310014

Gene position: 984304-983699 (Counterclockwise)

Preceding gene: 83310018

Following gene: 83310013

Centisome position: 19.82

GC content: 50.99

Gene sequence:

>606_bases
ATGAGCGTTCTTTCTCAAGTGACTGCCGACAACCGCTACGCATTCGATCAGGCGTGCCGGGTCAAGGCCATCGACCTTGC
AGCCAGCTTGGGCTTGGACCGGCGTCTGAGCATCAATTTCCTACCCAATGCCGTTTATGATCCCAAGGCATGTATACGTG
CCACCTTGGCTGCTGCGGACCGAGTCAACTTTCCCCTCGATCTCATTACCTTTGAGATTACTGAGGACGAAAGGATCACA
GATACCCCTCATCTGCTTGGCATCATCGAGGAATACCGCCGCCATGGATTCAGGGTGGCACTTGATGATTTTGGGGCGGG
CTATGCCGGTCTTAATGTGCTGGCAGAGATGATTGTTGATGTCGTGAAATTGGACATCGCCCTGGTCCGCAATATCGACC
ATGATCAACGACGCCGTACAATTGCCCTGGGAATGATAAAGGTATGTCAGGAGCTTGGCGTTGATGTTGTCGCCGAGGGA
GTGGAGCGGACTCAAGAATTAAAAGTTCTTCGTGATGCCGGCGTGCGTTATGTACAAGGATTTTTATTTTCGCGACCCGC
TGTTAACTCCATTGCTTTAGACTCGAGCATTAACTTTTCACCTTAA

Upstream 100 bases:

>100_bases
TATTCCTTTCACCATGGCGTTTCAGCCAATTGTGGATTTGCATGAGCGACGCATATCGACCTACGAAGCACTGGTGAGAG
GTCCAGAGGGCCAACCTGCT

Downstream 100 bases:

>100_bases
ATAGTAATTATATATAATAACAATATTATTACGTGGACTCATCCTGAGCATGCCTATAATGGCTTATCTGGGCTGATACG
CAAATTCAGGGGTATCCTCA

Product: EAL domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 201; Mature: 200

Protein sequence:

>201_residues
MSVLSQVTADNRYAFDQACRVKAIDLAASLGLDRRLSINFLPNAVYDPKACIRATLAAADRVNFPLDLITFEITEDERIT
DTPHLLGIIEEYRRHGFRVALDDFGAGYAGLNVLAEMIVDVVKLDIALVRNIDHDQRRRTIALGMIKVCQELGVDVVAEG
VERTQELKVLRDAGVRYVQGFLFSRPAVNSIALDSSINFSP

Sequences:

>Translated_201_residues
MSVLSQVTADNRYAFDQACRVKAIDLAASLGLDRRLSINFLPNAVYDPKACIRATLAAADRVNFPLDLITFEITEDERIT
DTPHLLGIIEEYRRHGFRVALDDFGAGYAGLNVLAEMIVDVVKLDIALVRNIDHDQRRRTIALGMIKVCQELGVDVVAEG
VERTQELKVLRDAGVRYVQGFLFSRPAVNSIALDSSINFSP
>Mature_200_residues
SVLSQVTADNRYAFDQACRVKAIDLAASLGLDRRLSINFLPNAVYDPKACIRATLAAADRVNFPLDLITFEITEDERITD
TPHLLGIIEEYRRHGFRVALDDFGAGYAGLNVLAEMIVDVVKLDIALVRNIDHDQRRRTIALGMIKVCQELGVDVVAEGV
ERTQELKVLRDAGVRYVQGFLFSRPAVNSIALDSSINFSP

Specific function: Overexpression reduces biofilm formation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 EAL domain [H]

Homologues:

Organism=Escherichia coli, GI1790496, Length=153, Percent_Identity=33.3333333333333, Blast_Score=90, Evalue=9e-20,
Organism=Escherichia coli, GI1787541, Length=156, Percent_Identity=32.6923076923077, Blast_Score=88, Evalue=4e-19,
Organism=Escherichia coli, GI226510982, Length=183, Percent_Identity=33.879781420765, Blast_Score=86, Evalue=1e-18,
Organism=Escherichia coli, GI1787410, Length=180, Percent_Identity=31.1111111111111, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI87082096, Length=152, Percent_Identity=30.2631578947368, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI87081743, Length=117, Percent_Identity=35.042735042735, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1786507, Length=118, Percent_Identity=33.0508474576271, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI87081845, Length=118, Percent_Identity=31.3559322033898, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI87081980, Length=122, Percent_Identity=33.6065573770492, Blast_Score=74, Evalue=5e-15,
Organism=Escherichia coli, GI87081921, Length=184, Percent_Identity=28.804347826087, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1788849, Length=152, Percent_Identity=27.6315789473684, Blast_Score=66, Evalue=1e-12,
Organism=Escherichia coli, GI1788502, Length=166, Percent_Identity=26.5060240963855, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001633 [H]

Pfam domain/function: PF00563 EAL [H]

EC number: NA

Molecular weight: Translated: 22306; Mature: 22175

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVLSQVTADNRYAFDQACRVKAIDLAASLGLDRRLSINFLPNAVYDPKACIRATLAAAD
CCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
RVNFPLDLITFEITEDERITDTPHLLGIIEEYRRHGFRVALDDFGAGYAGLNVLAEMIVD
CCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHH
VVKLDIALVRNIDHDQRRRTIALGMIKVCQELGVDVVAEGVERTQELKVLRDAGVRYVQG
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLFSRPAVNSIALDSSINFSP
HHHCCCCCCCEEECCCCCCCC
>Mature Secondary Structure 
SVLSQVTADNRYAFDQACRVKAIDLAASLGLDRRLSINFLPNAVYDPKACIRATLAAAD
CHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
RVNFPLDLITFEITEDERITDTPHLLGIIEEYRRHGFRVALDDFGAGYAGLNVLAEMIVD
CCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHH
VVKLDIALVRNIDHDQRRRTIALGMIKVCQELGVDVVAEGVERTQELKVLRDAGVRYVQG
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLFSRPAVNSIALDSSINFSP
HHHCCCCCCCEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8265357; 9278503 [H]