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The map label for this gene is psd

Identifier: 83309703

GI number: 83309703

Start: 651073

End: 651795

Strand: Reverse

Name: psd

Synonym: amb0604

Alternate gene names: 83309703

Gene position: 651795-651073 (Counterclockwise)

Preceding gene: 83309705

Following gene: 83309702

Centisome position: 13.12

GC content: 68.6

Gene sequence:

>723_bases
TTGAGAGGTGAAGCGGTGCAGGCGCAGCAGATTTCCTTGACCAAGTATCTTTGGTTCCCCATCAACCGCGAGGGCTGGCC
GTTCGTCGGGCTCTTTGCCTTGGGGGCCCTGCTGCTGGGCCAGATCTGGGGGCCGCTGGGCTGGGCCGGCGCCCTGCTCA
CCTGCTGGTGCGCCTGGTTCTTCCGCGATCCCGACCGCGTCACCCCCACCCGCGACGGCCTGGTGATCAGCCCCGCCGAC
GGCGTGGTGCAGATGGTCGGCATGGTCGCCCCGCCGCCCGAGCTGGACATGGGGGACGCGCCCCGCATGCGCATTTCGGT
GTTCATGAGCGTGTTCTCGGTCCACATCAACCGCTGCCCGGTGGACGGCACCATCGTCAAGTGCTCGTACCGGCCGGGCA
AGTTCCTCGACGCCTCCCTGGACAAGGCCAGCGCCGACAACGAGCGCATGAGCGTGCGCATGAGCCGCGCCGATGGCCGC
GAGATCGCCTTCGTGCAGATCGCCGGCCTGGTGGCCCGGCGCATCAAGTGCGACCTGAAGGACGGCCAGCAGGTCCGCGC
CGGCCAGCGTTTCGGGCTGATCCGCTTCGGCTCGCGCGTCGACGTCTATCTGCCCGACGGCGTGGCGCCCCTGGTCAGCC
TGGGACAAAGCATCATCGCCGGCGAGACGGTTCTGGCCGACCTGGATTCCACGGAAGGCGCCCGCCAGGGAGAAATCCGC
TGA

Upstream 100 bases:

>100_bases
CGCCGCCCGATCCTCGACAAAATTCATGGTAGAAACTTCAATTCCTCCACACTAGTATCATGACGCCGACCGGGATGAAA
ATCCAAAAGGGGCGGTGTTA

Downstream 100 bases:

>100_bases
TGTTCCGCCCCAAGCGTCCGCCCCGCATCCGGGGGTTGTCGATCAACAAGCTGATCCCCAACATTCTGACGCTGCTGGCG
CTGTGCGCCGGGTTGACCGC

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MRGEAVQAQQISLTKYLWFPINREGWPFVGLFALGALLLGQIWGPLGWAGALLTCWCAWFFRDPDRVTPTRDGLVISPAD
GVVQMVGMVAPPPELDMGDAPRMRISVFMSVFSVHINRCPVDGTIVKCSYRPGKFLDASLDKASADNERMSVRMSRADGR
EIAFVQIAGLVARRIKCDLKDGQQVRAGQRFGLIRFGSRVDVYLPDGVAPLVSLGQSIIAGETVLADLDSTEGARQGEIR

Sequences:

>Translated_240_residues
MRGEAVQAQQISLTKYLWFPINREGWPFVGLFALGALLLGQIWGPLGWAGALLTCWCAWFFRDPDRVTPTRDGLVISPAD
GVVQMVGMVAPPPELDMGDAPRMRISVFMSVFSVHINRCPVDGTIVKCSYRPGKFLDASLDKASADNERMSVRMSRADGR
EIAFVQIAGLVARRIKCDLKDGQQVRAGQRFGLIRFGSRVDVYLPDGVAPLVSLGQSIIAGETVLADLDSTEGARQGEIR
>Mature_240_residues
MRGEAVQAQQISLTKYLWFPINREGWPFVGLFALGALLLGQIWGPLGWAGALLTCWCAWFFRDPDRVTPTRDGLVISPAD
GVVQMVGMVAPPPELDMGDAPRMRISVFMSVFSVHINRCPVDGTIVKCSYRPGKFLDASLDKASADNERMSVRMSRADGR
EIAFVQIAGLVARRIKCDLKDGQQVRAGQRFGLIRFGSRVDVYLPDGVAPLVSLGQSIIAGETVLADLDSTEGARQGEIR

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 3 subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_MAGSA (Q2W9R7)

Other databases:

- EMBL:   AP007255
- RefSeq:   YP_419967.1
- STRING:   Q2W9R7
- GeneID:   3802520
- GenomeReviews:   AP007255_GR
- KEGG:   mag:amb0604
- NMPDR:   fig|342108.5.peg.571
- eggNOG:   COG0688
- HOGENOM:   HBG541103
- OMA:   IFMSVFN
- ProtClustDB:   PRK05305
- BioCyc:   MMAG342108:AMB0604-MONOMER
- HAMAP:   MF_00664
- InterPro:   IPR003817
- InterPro:   IPR004428
- TIGRFAMs:   TIGR00164

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 26268; Mature: 26268

Theoretical pI: Translated: 8.20; Mature: 8.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGEAVQAQQISLTKYLWFPINREGWPFVGLFALGALLLGQIWGPLGWAGALLTCWCAWF
CCCCCCCHHHEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
FRDPDRVTPTRDGLVISPADGVVQMVGMVAPPPELDMGDAPRMRISVFMSVFSVHINRCP
HCCCCCCCCCCCCEEECCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
VDGTIVKCSYRPGKFLDASLDKASADNERMSVRMSRADGREIAFVQIAGLVARRIKCDLK
CCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEHHHHHHHHHHHHHCCCC
DGQQVRAGQRFGLIRFGSRVDVYLPDGVAPLVSLGQSIIAGETVLADLDSTEGARQGEIR
CCCHHHCCCCCCEEEECCEEEEEECCCHHHHHHCCHHHHCCCHHEEECCCCCCCCCCCCC
>Mature Secondary Structure
MRGEAVQAQQISLTKYLWFPINREGWPFVGLFALGALLLGQIWGPLGWAGALLTCWCAWF
CCCCCCCHHHEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
FRDPDRVTPTRDGLVISPADGVVQMVGMVAPPPELDMGDAPRMRISVFMSVFSVHINRCP
HCCCCCCCCCCCCEEECCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
VDGTIVKCSYRPGKFLDASLDKASADNERMSVRMSRADGREIAFVQIAGLVARRIKCDLK
CCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEHHHHHHHHHHHHHCCCC
DGQQVRAGQRFGLIRFGSRVDVYLPDGVAPLVSLGQSIIAGETVLADLDSTEGARQGEIR
CCCHHHCCCCCCEEEECCEEEEEECCCHHHHHHCCHHHHCCCHHEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA