Click here to switch to the map view.

The map label for this gene is dedA [H]

Identifier: 82703540

GI number: 82703540

Start: 2763145

End: 2763933

Strand: Reverse

Name: dedA [H]

Synonym: Nmul_A2425

Alternate gene names: 82703540

Gene position: 2763933-2763145 (Counterclockwise)

Preceding gene: 82703541

Following gene: 82703537

Centisome position: 86.8

GC content: 50.44

Gene sequence:

>789_bases
GTGTTTCGCGCAAGGATATTGTCAAACCCGAAAAGAAGCCTGAACCGGAAGCGGTACCTTGAACCGGAATCCATAAATCA
AACTCAGGCTTTTCCCTCTGGGGGGCCTTTCATATCCATTCAGTCCATTTTGGAAATTATTGCCACCTTTATCGACATCA
TCCTCCACCTGGATAAACACCTGATCTGGCTGGTGGAGAATTATGGCAGCTGGGTTTATCTCATACTGTTCCTGATAATT
TTTTGTGAAACAGGCTTGGTGGTGACTCCATTCCTGCCAGGGGATTCGCTGCTGTTTGTCGCGGGCGCCATCGCAGCTAC
AGGGGCGATGGAGGTAACCGGACTGGCAGCGCTCCTCATGTTGGCCGCATTCTGCGGAGATAATACGAATTATTGGATCG
GGCGCTATTTCGGCCCGAGAATATTCACGCGGACTGATTCGCGCCTATTGAATCGCGCTCATCTGGAAAAAACCGAGGCC
TTTTACGCCAGGCATGGTGGAAAGACAATCATCTTTGCGCGTTTTCTGCCTATCATCCGTACCTTTGCGCCCTTTGTCGC
AGGCATCGGACAAATGATTTATCCCCGTTTCATGGCTTACAGCGCCTTCGGCAGCATTTTCTGGATCAGTTTCTTCGTGT
TCGGGGGGTTCTTCTTTGGCAATGTGCCGATAGTAAAAAATAATCTGACTTTCTTCATTTTCGGCATCATTATCATTTCC
GTCCTTCCCGGGGTGATCCAGTTCATGCGGGGGTGGCTCGAAAACCGCGCTGCAGCCCGTTCGCGCTAG

Upstream 100 bases:

>100_bases
GGCGAATCCCTGCATTACTTCGCTCTGGCCCTCACCATCGGCATTCTGTTCGGCATTTATTCCTCTGTGCTGGTCGCAAG
CCCCCTTCTCATGCTATTGG

Downstream 100 bases:

>100_bases
AGAGACCGCAAGCGGACAAATCGGAACCCGATTTGCGGATGCTTCAGAAAGGCAGAAGGAATGGAAAGGGTTGTCACATC
AATCGGTATTTTTATCGGTC

Product: hypothetical protein

Products: NA

Alternate protein names: Protein DSG-1 [H]

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MFRARILSNPKRSLNRKRYLEPESINQTQAFPSGGPFISIQSILEIIATFIDIILHLDKHLIWLVENYGSWVYLILFLII
FCETGLVVTPFLPGDSLLFVAGAIAATGAMEVTGLAALLMLAAFCGDNTNYWIGRYFGPRIFTRTDSRLLNRAHLEKTEA
FYARHGGKTIIFARFLPIIRTFAPFVAGIGQMIYPRFMAYSAFGSIFWISFFVFGGFFFGNVPIVKNNLTFFIFGIIIIS
VLPGVIQFMRGWLENRAAARSR

Sequences:

>Translated_262_residues
MFRARILSNPKRSLNRKRYLEPESINQTQAFPSGGPFISIQSILEIIATFIDIILHLDKHLIWLVENYGSWVYLILFLII
FCETGLVVTPFLPGDSLLFVAGAIAATGAMEVTGLAALLMLAAFCGDNTNYWIGRYFGPRIFTRTDSRLLNRAHLEKTEA
FYARHGGKTIIFARFLPIIRTFAPFVAGIGQMIYPRFMAYSAFGSIFWISFFVFGGFFFGNVPIVKNNLTFFIFGIIIIS
VLPGVIQFMRGWLENRAAARSR
>Mature_262_residues
MFRARILSNPKRSLNRKRYLEPESINQTQAFPSGGPFISIQSILEIIATFIDIILHLDKHLIWLVENYGSWVYLILFLII
FCETGLVVTPFLPGDSLLFVAGAIAATGAMEVTGLAALLMLAAFCGDNTNYWIGRYFGPRIFTRTDSRLLNRAHLEKTEA
FYARHGGKTIIFARFLPIIRTFAPFVAGIGQMIYPRFMAYSAFGSIFWISFFVFGGFFFGNVPIVKNNLTFFIFGIIIIS
VLPGVIQFMRGWLENRAAARSR

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1788656, Length=209, Percent_Identity=55.5023923444976, Blast_Score=249, Evalue=2e-67,
Organism=Escherichia coli, GI1789384, Length=171, Percent_Identity=31.5789473684211, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1789481, Length=156, Percent_Identity=32.6923076923077, Blast_Score=86, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 29620; Mature: 29620

Theoretical pI: Translated: 10.38; Mature: 10.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRARILSNPKRSLNRKRYLEPESINQTQAFPSGGPFISIQSILEIIATFIDIILHLDKH
CCCCHHHCCCHHHHHHHHCCCCCCCCHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHH
LIWLVENYGSWVYLILFLIIFCETGLVVTPFLPGDSLLFVAGAIAATGAMEVTGLAALLM
HHHHHHHCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHH
LAAFCGDNTNYWIGRYFGPRIFTRTDSRLLNRAHLEKTEAFYARHGGKTIIFARFLPIIR
HHHHHCCCCCEEEEEECCCCCEECCHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHH
TFAPFVAGIGQMIYPRFMAYSAFGSIFWISFFVFGGFFFGNVPIVKNNLTFFIFGIIIIS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHH
VLPGVIQFMRGWLENRAAARSR
HHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFRARILSNPKRSLNRKRYLEPESINQTQAFPSGGPFISIQSILEIIATFIDIILHLDKH
CCCCHHHCCCHHHHHHHHCCCCCCCCHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHH
LIWLVENYGSWVYLILFLIIFCETGLVVTPFLPGDSLLFVAGAIAATGAMEVTGLAALLM
HHHHHHHCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHH
LAAFCGDNTNYWIGRYFGPRIFTRTDSRLLNRAHLEKTEAFYARHGGKTIIFARFLPIIR
HHHHHCCCCCEEEEEECCCCCEECCHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHH
TFAPFVAGIGQMIYPRFMAYSAFGSIFWISFFVFGGFFFGNVPIVKNNLTFFIFGIIIIS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHH
VLPGVIQFMRGWLENRAAARSR
HHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]