Click here to switch to the map view.

The map label for this gene is hoxY [H]

Identifier: 82702796

GI number: 82702796

Start: 1911540

End: 1912088

Strand: Direct

Name: hoxY [H]

Synonym: Nmul_A1672

Alternate gene names: 82702796

Gene position: 1911540-1912088 (Clockwise)

Preceding gene: 82702795

Following gene: 82702797

Centisome position: 60.03

GC content: 54.1

Gene sequence:

>549_bases
ATGGCGGATGAAAAACCCAAGATTCGCATCGCGACCTGTTCCCTGGCAGGATGTTTCGGCTGCCATACCTCACTGCTCGA
TATCGACGAGCGGCTGTTTGATCTTATGGAGATGGTCGAATTCGACCGCACTCCCTTCACGGATATCAAGCATTGCGGTC
CGTGCGATATCGGCATTGTCGAAGGCGGGGTCAGCAATGCCGAGAATGCCCGGGTGCTTAAGGAATTCCGCGAGAATTGC
AACGTGCTGGTGGCAATCGGCTCCTGCGCGATCACGGGTAACGTTCCAGCGCTGCGCAACAATATCGATTTGTGGGACTG
CTTTCAGGAGGTGTATTTGTATGACTCTGGAACAGAAGGCAAGCAGATACCCAACGATCCAGAGTTGCCGCTTCCATTCG
ACAAGGTGTATCCCATCTACGAGGTCGTGAAAGTGGATTATTTCCTGCACGGCTGCCCTCCCCCTGCCGATGCGATCTGG
AGATTTCTCACTGCCCTGATCCAGGGAAGAGAGCCGGAGATCGGTTATGAATCGCTCCGGTACGATTAG

Upstream 100 bases:

>100_bases
GGTTATACTGTACCCATAGGGCAGCGGATATTCGATCAGAAGACGCTGCGCGAATTCCATCTGGAGCAGCAGAAGCGAGT
CGAGTCTGAGGATGGACCGG

Downstream 100 bases:

>100_bases
GATATTCCCCTTGTGCTGTCCCTTGCCTGCACCAATAGCGGTCGGAAGGAATATGGGAGTAGCGGATGACATCTGAACTG
GAAACTGCCGCGAATCCAGA

Product: hydrogen dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 181

Protein sequence:

>182_residues
MADEKPKIRIATCSLAGCFGCHTSLLDIDERLFDLMEMVEFDRTPFTDIKHCGPCDIGIVEGGVSNAENARVLKEFRENC
NVLVAIGSCAITGNVPALRNNIDLWDCFQEVYLYDSGTEGKQIPNDPELPLPFDKVYPIYEVVKVDYFLHGCPPPADAIW
RFLTALIQGREPEIGYESLRYD

Sequences:

>Translated_182_residues
MADEKPKIRIATCSLAGCFGCHTSLLDIDERLFDLMEMVEFDRTPFTDIKHCGPCDIGIVEGGVSNAENARVLKEFRENC
NVLVAIGSCAITGNVPALRNNIDLWDCFQEVYLYDSGTEGKQIPNDPELPLPFDKVYPIYEVVKVDYFLHGCPPPADAIW
RFLTALIQGREPEIGYESLRYD
>Mature_181_residues
ADEKPKIRIATCSLAGCFGCHTSLLDIDERLFDLMEMVEFDRTPFTDIKHCGPCDIGIVEGGVSNAENARVLKEFRENCN
VLVAIGSCAITGNVPALRNNIDLWDCFQEVYLYDSGTEGKQIPNDPELPLPFDKVYPIYEVVKVDYFLHGCPPPADAIWR
FLTALIQGREPEIGYESLRYD

Specific function: Unknown

COG id: COG1941

COG function: function code C; Coenzyme F420-reducing hydrogenase, gamma subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006137 [H]

Pfam domain/function: PF01058 Oxidored_q6 [H]

EC number: =1.12.1.2 [H]

Molecular weight: Translated: 20455; Mature: 20323

Theoretical pI: Translated: 4.25; Mature: 4.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.9 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
5.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADEKPKIRIATCSLAGCFGCHTSLLDIDERLFDLMEMVEFDRTPFTDIKHCGPCDIGIV
CCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEE
EGGVSNAENARVLKEFRENCNVLVAIGSCAITGNVPALRNNIDLWDCFQEVYLYDSGTEG
ECCCCCCHHHHHHHHHHHCCCEEEEECCEEEECCCCHHHCCCCHHHHHHHHHHCCCCCCC
KQIPNDPELPLPFDKVYPIYEVVKVDYFLHGCPPPADAIWRFLTALIQGREPEIGYESLR
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHC
YD
CC
>Mature Secondary Structure 
ADEKPKIRIATCSLAGCFGCHTSLLDIDERLFDLMEMVEFDRTPFTDIKHCGPCDIGIV
CCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEE
EGGVSNAENARVLKEFRENCNVLVAIGSCAITGNVPALRNNIDLWDCFQEVYLYDSGTEG
ECCCCCCHHHHHHHHHHHCCCEEEEECCEEEECCCCHHHCCCCHHHHHHHHHHCCCCCCC
KQIPNDPELPLPFDKVYPIYEVVKVDYFLHGCPPPADAIWRFLTALIQGREPEIGYESLR
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHC
YD
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2188945; 12948488; 2496982 [H]