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The map label for this gene is yiaD [H]

Identifier: 82701882

GI number: 82701882

Start: 872523

End: 873200

Strand: Direct

Name: yiaD [H]

Synonym: Nmul_A0749

Alternate gene names: 82701882

Gene position: 872523-873200 (Clockwise)

Preceding gene: 82701881

Following gene: 82701884

Centisome position: 27.4

GC content: 57.23

Gene sequence:

>678_bases
ATGCGGAAGCAATTATCGGTTATTTCAATAACGACGGTTTTGGCATTGGGTGGCTGCGCCAGTTCACCCGAAACCCAGAG
TACCAGAACAAGAGACACTGCCATAGGCGCCGGCATTGGCGCAGGTACGGGCGCACTGATTGGAGCAATTGCAGGCAAGG
GGAAAGGCGCGGCAATCGGTGCAGCGGCTGGGGCTGGCCTCGGCGCCATCGCCGGAAACGTGTGGTCCCGGAGAATGGAA
GAGCAGAAACGCGAAATGGAGCAGGCCACAGCAGGAACAGGGGTGGAAGTTGTGAAAACCTCTGATAATCGCCTGCGGCT
GGATATCCCCAGCGATATCTCGTTTGATACCGGTCGCGCCGACATCAGGCCGAATTTCAGGCCTGTCCTGGACAGCTTTG
CCACCAGCCTGAACAATAATCCCATTACAGAGGTGACTATTATCGGTCATACGGACAGCTCGGGCAGTGATGCCGTCAAC
AACCCCTTGTCCTTGAACCGGGCAGCCAGCACGCGGGACTATCTGGCGAGCCGCGGGGTTTCTCCAAACCGCGTAAGGAT
CGAAGGCCGCGGTTCGCGCGAGCCTATTGTCGCCAATGACACGCCTCAGAACAGGGCAAGGAATCGCCGGGTTGAAATCT
ATGTCGCTGAACCGAAAGAAGCTTCCCAGCAATACTAG

Upstream 100 bases:

>100_bases
CCAAGGTCTAAGGAATCAGCCAAGGTCTAAGGAACCACTTAAGAGCGCTATCAGGAGTTCTCAAGCAATAATTCCCTAAT
CCCCCAAAACAGGAGAAGTC

Downstream 100 bases:

>100_bases
GGGAGGCGATAAACCTTTTACAGGTACGCGTCCTCTCGAGGGGGATGTGTACCGCCTGGGGAGTTTATGCCTGAAACCAA
GTGTGTTTCCCCCGCATGGG

Product: OmpA/MotB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MRKQLSVISITTVLALGGCASSPETQSTRTRDTAIGAGIGAGTGALIGAIAGKGKGAAIGAAAGAGLGAIAGNVWSRRME
EQKREMEQATAGTGVEVVKTSDNRLRLDIPSDISFDTGRADIRPNFRPVLDSFATSLNNNPITEVTIIGHTDSSGSDAVN
NPLSLNRAASTRDYLASRGVSPNRVRIEGRGSREPIVANDTPQNRARNRRVEIYVAEPKEASQQY

Sequences:

>Translated_225_residues
MRKQLSVISITTVLALGGCASSPETQSTRTRDTAIGAGIGAGTGALIGAIAGKGKGAAIGAAAGAGLGAIAGNVWSRRME
EQKREMEQATAGTGVEVVKTSDNRLRLDIPSDISFDTGRADIRPNFRPVLDSFATSLNNNPITEVTIIGHTDSSGSDAVN
NPLSLNRAASTRDYLASRGVSPNRVRIEGRGSREPIVANDTPQNRARNRRVEIYVAEPKEASQQY
>Mature_225_residues
MRKQLSVISITTVLALGGCASSPETQSTRTRDTAIGAGIGAGTGALIGAIAGKGKGAAIGAAAGAGLGAIAGNVWSRRME
EQKREMEQATAGTGVEVVKTSDNRLRLDIPSDISFDTGRADIRPNFRPVLDSFATSLNNNPITEVTIIGHTDSSGSDAVN
NPLSLNRAASTRDYLASRGVSPNRVRIEGRGSREPIVANDTPQNRARNRRVEIYVAEPKEASQQY

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=215, Percent_Identity=36.7441860465116, Blast_Score=117, Evalue=7e-28,
Organism=Escherichia coli, GI1787191, Length=130, Percent_Identity=33.8461538461538, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1786962, Length=103, Percent_Identity=34.9514563106796, Blast_Score=66, Evalue=1e-12,
Organism=Escherichia coli, GI1788957, Length=113, Percent_Identity=32.7433628318584, Blast_Score=61, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 23631; Mature: 23631

Theoretical pI: Translated: 10.21; Mature: 10.21

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKQLSVISITTVLALGGCASSPETQSTRTRDTAIGAGIGAGTGALIGAIAGKGKGAAIG
CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHCCCCCCCEEE
AAAGAGLGAIAGNVWSRRMEEQKREMEQATAGTGVEVVKTSDNRLRLDIPSDISFDTGRA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEECCCCCCCCCCCC
DIRPNFRPVLDSFATSLNNNPITEVTIIGHTDSSGSDAVNNPLSLNRAASTRDYLASRGV
CCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC
SPNRVRIEGRGSREPIVANDTPQNRARNRRVEIYVAEPKEASQQY
CCCEEEEECCCCCCCEEECCCCHHHHCCCEEEEEEECCHHCCCCC
>Mature Secondary Structure
MRKQLSVISITTVLALGGCASSPETQSTRTRDTAIGAGIGAGTGALIGAIAGKGKGAAIG
CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHCCCCCCCEEE
AAAGAGLGAIAGNVWSRRMEEQKREMEQATAGTGVEVVKTSDNRLRLDIPSDISFDTGRA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEECCCCCCCCCCCC
DIRPNFRPVLDSFATSLNNNPITEVTIIGHTDSSGSDAVNNPLSLNRAASTRDYLASRGV
CCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC
SPNRVRIEGRGSREPIVANDTPQNRARNRRVEIYVAEPKEASQQY
CCCEEEEECCCCCCCEEECCCCHHHHCCCEEEEEEECCHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]