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The map label for this gene is rfbD [H]

Identifier: 82701399

GI number: 82701399

Start: 287207

End: 288109

Strand: Direct

Name: rfbD [H]

Synonym: Nmul_A0265

Alternate gene names: 82701399

Gene position: 287207-288109 (Clockwise)

Preceding gene: 82701398

Following gene: 82701400

Centisome position: 9.02

GC content: 56.48

Gene sequence:

>903_bases
ATGAAAATTCTGCTGTTCGGAAAAGACGGCCAGGTTGGGTGGGAACTGCAGCGCAGCCTTGCCCCCCTGGGGGAGATAGT
GGCTCTGGATTTTGGCAGCCAGGAATACTGCGGTGACTTTACGCGCTGCGATGGAATCGCGGATACCGTTCGGACAGTTG
TGCCGGACGTGATCGTGAATGCCGCCGCCTATACAGCGGTGGACAAGGCTGAAAGCGAGCCGGAGCGTGTCCGTATCATC
AACGCCCTCGCTCCCGCTATACTCGCCCGCGAGGCCGGCAAGCTGGGTGCCTGGCTGGTACATTATTCCACCGATTATGT
ATTTGACGGGGGTGGAAGCGCGCCTCGGGTAGAAACCGACCCCCCCGCCCCTTTAAATATGTACGGCATAACCAAGCTGG
AAGGCGAGCAAGCGATTCTGACCGCGGATTGCAATCATCTCATCTTTCGCACGAGTTGGGTTTTTGCAGCGCGTGGCAGT
AATTTCGCAAAAACCATGCTGCGCCTGGCGCAGCAACGCGATAGTCTCAATGTTATCGATGACCAGGTCGGTGCTCCTAC
CGGCGCGGAGCTTCTAGCCGACATCACTGCTCACGTCATACGGATAAGCAGGCAGCGCCAGAATATCTCGGGGCTTTATC
ATCTGGCTGCCGCGGGTGAAACATCGTGGTACGGGTATGCGAATTTTGTATTGAACTTTGCGCGGCAGAGGGGAGTCAAG
CTCACGGCCGCGCCGGAAAATGTTTTCCCGATAGCAAGCAACGAATTTCCATCCGCCGCCCGGCGGCCAAAAAACTCGCG
CCTCGATACCGCAAAACTGCAAAGCACATTCGATTTAAGCTTGCCGTCATGGGAGACAGGGGTTGCGCGCATGCTCACCG
AAATTCTCGAGAAACCACTATGA

Upstream 100 bases:

>100_bases
AAACCGTGCAATGGTATCTCGACAACGCGGCTTGGGTCACCCATGTTCAATCCGGCGCTTACCGGCACTGGGTGGAGAAG
AACTACAAAGAGCGCGCTTG

Downstream 100 bases:

>100_bases
TTCAGCGTAAAGGCATCATTCTTGCCGGCGGCTCCGGCACACGGCTCTATCCGGTGACAAAAGCAGTCTCCAAACAACTG
CTGCCTATTTACGACAAGCC

Product: dTDP-4-dehydrorhamnose reductase

Products: NA

Alternate protein names: dTDP-4-keto-L-rhamnose reductase; dTDP-6-deoxy-L-lyxo-4-hexulose reductase; dTDP-6-deoxy-L-mannose dehydrogenase; dTDP-L-rhamnose synthase [H]

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MKILLFGKDGQVGWELQRSLAPLGEIVALDFGSQEYCGDFTRCDGIADTVRTVVPDVIVNAAAYTAVDKAESEPERVRII
NALAPAILAREAGKLGAWLVHYSTDYVFDGGGSAPRVETDPPAPLNMYGITKLEGEQAILTADCNHLIFRTSWVFAARGS
NFAKTMLRLAQQRDSLNVIDDQVGAPTGAELLADITAHVIRISRQRQNISGLYHLAAAGETSWYGYANFVLNFARQRGVK
LTAAPENVFPIASNEFPSAARRPKNSRLDTAKLQSTFDLSLPSWETGVARMLTEILEKPL

Sequences:

>Translated_300_residues
MKILLFGKDGQVGWELQRSLAPLGEIVALDFGSQEYCGDFTRCDGIADTVRTVVPDVIVNAAAYTAVDKAESEPERVRII
NALAPAILAREAGKLGAWLVHYSTDYVFDGGGSAPRVETDPPAPLNMYGITKLEGEQAILTADCNHLIFRTSWVFAARGS
NFAKTMLRLAQQRDSLNVIDDQVGAPTGAELLADITAHVIRISRQRQNISGLYHLAAAGETSWYGYANFVLNFARQRGVK
LTAAPENVFPIASNEFPSAARRPKNSRLDTAKLQSTFDLSLPSWETGVARMLTEILEKPL
>Mature_300_residues
MKILLFGKDGQVGWELQRSLAPLGEIVALDFGSQEYCGDFTRCDGIADTVRTVVPDVIVNAAAYTAVDKAESEPERVRII
NALAPAILAREAGKLGAWLVHYSTDYVFDGGGSAPRVETDPPAPLNMYGITKLEGEQAILTADCNHLIFRTSWVFAARGS
NFAKTMLRLAQQRDSLNVIDDQVGAPTGAELLADITAHVIRISRQRQNISGLYHLAAAGETSWYGYANFVLNFARQRGVK
LTAAPENVFPIASNEFPSAARRPKNSRLDTAKLQSTFDLSLPSWETGVARMLTEILEKPL

Specific function: Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose. RmlD uses NADH and NADPH nearly equally well [H]

COG id: COG1091

COG function: function code M; dTDP-4-dehydrorhamnose reductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dTDP-4-dehydrorhamnose reductase family [H]

Homologues:

Organism=Homo sapiens, GI11034825, Length=236, Percent_Identity=27.9661016949153, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI33519455, Length=236, Percent_Identity=27.9661016949153, Blast_Score=90, Evalue=2e-18,
Organism=Escherichia coli, GI1788352, Length=296, Percent_Identity=58.1081081081081, Blast_Score=365, Evalue=1e-102,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005913
- InterPro:   IPR016040 [H]

Pfam domain/function: PF04321 RmlD_sub_bind [H]

EC number: =1.1.1.133 [H]

Molecular weight: Translated: 32754; Mature: 32754

Theoretical pI: Translated: 5.75; Mature: 5.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILLFGKDGQVGWELQRSLAPLGEIVALDFGSQEYCGDFTRCDGIADTVRTVVPDVIVN
CEEEEECCCCCCHHHHHHHHCCHHHEEEEECCCHHHCCCHHHHCHHHHHHHHHHHHHHHH
AAAYTAVDKAESEPERVRIINALAPAILAREAGKLGAWLVHYSTDYVFDGGGSAPRVETD
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEECCCCCCCCCCCC
PPAPLNMYGITKLEGEQAILTADCNHLIFRTSWVFAARGSNFAKTMLRLAQQRDSLNVID
CCCCCCEEEEEEECCCCEEEEECCCEEEEEEEEEEEECCCHHHHHHHHHHHHCCCCCHHH
DQVGAPTGAELLADITAHVIRISRQRQNISGLYHLAAAGETSWYGYANFVLNFARQRGVK
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHCCCE
LTAAPENVFPIASNEFPSAARRPKNSRLDTAKLQSTFDLSLPSWETGVARMLTEILEKPL
EEECCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHCEEECCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKILLFGKDGQVGWELQRSLAPLGEIVALDFGSQEYCGDFTRCDGIADTVRTVVPDVIVN
CEEEEECCCCCCHHHHHHHHCCHHHEEEEECCCHHHCCCHHHHCHHHHHHHHHHHHHHHH
AAAYTAVDKAESEPERVRIINALAPAILAREAGKLGAWLVHYSTDYVFDGGGSAPRVETD
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEECCCCCCCCCCCC
PPAPLNMYGITKLEGEQAILTADCNHLIFRTSWVFAARGSNFAKTMLRLAQQRDSLNVID
CCCCCCEEEEEEECCCCEEEEECCCEEEEEEEEEEEECCCHHHHHHHHHHHHCCCCCHHH
DQVGAPTGAELLADITAHVIRISRQRQNISGLYHLAAAGETSWYGYANFVLNFARQRGVK
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHCCCE
LTAAPENVFPIASNEFPSAARRPKNSRLDTAKLQSTFDLSLPSWETGVARMLTEILEKPL
EEECCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHCEEECCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1710759; 11677609 [H]