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The map label for this gene is 78780129

Identifier: 78780129

GI number: 78780129

Start: 1633263

End: 1635245

Strand: Reverse

Name: 78780129

Synonym: PMT9312_1744

Alternate gene names: NA

Gene position: 1635245-1633263 (Counterclockwise)

Preceding gene: 78780130

Following gene: 78780127

Centisome position: 95.67

GC content: 36.16

Gene sequence:

>1983_bases
ATGCAATCAAGTTCAAATTCAACTGTAAATAGATCTACTAATGATTCATCTAGATCTAAAAGTAATACGCCAGCTCTACG
CGTAATACCTCTTGGAGGATTACATGAAATAGGAAAAAACACTTGTGTTTTTGAATATGGTGATGAATTGATGCTTGTTG
ATGCAGGCCTAGCTTTTCCATCTGATGGTATGCATGGCGTAAATATTGTAATGCCAGATACAACTTTCCTAAGAGAAAAT
CAAAGAAGAATTAAAGGAATGATCGTTACTCACGGTCATGAAGATCATATTGGAGGTATTTCTCATCATCTAAAGCATTT
TAATATTCCGATTATTTATGGTCCAAGACTGGCAATGTCAATGCTTAGAGGAAAAATGGAGGAAGCAGGGGTATCTGACA
GAACAACTATACAGACAGTAAATCCAAGAGATGTTGTAAAAGTTGGACAACATTTTTCTGTTGAATTTATTCGAAATACC
CATTCTATTTGCGATAGTTTTTCTTTAGCAGTTACAACACCTGTTGGCACAATTATTTTCACAGGAGATTTTAAGTTTGA
TCATATGCCAGTAGATGGCGAGCAATTTGATATTGAAAGAATGGTGCATTATGGGGAGAAGGGCGTTTTATGCATGTTCA
GTGATTCGACTAATGCCGAAGTTCCAGGTTTTTGTCCTTCTGAGAAGACTATCTATTCCTCTTTAGAAAAACATATTGCA
GAGGCAAAAGAACGAGTTATCCTTACCACTTTTGCTAGTTCTGTTCATAGAGTGACAATGATCTTAGAGTTAGCCATGAA
ACATGGCAGAAAGGTCGGTTTGTTAGGTAGATCTATGATAAATGTTATTGCTAAGGCGAGAGATATTGGTTATATGAAAT
GCCCAGATGATTTGTTTGTTCCTATCAAGCAAATTAGAGATTTGCCAGACAGAGAGACCTTATTATTAATGACTGGAAGT
CAAGGAGAACCCCTAGCAGCTTTAAGCAGAATATCTCGTGGTGAACATCAGCATGTTCGTCTTAAGACTACTGATACTGT
AATATTTTCAGCCAGCCCAATTCCTGGTAATACTATTTCTGTTGTTAATACAATAGATAGATTAATGAAACTCGGAGCAA
AGGTTGTTTATGGAAAGGGTGAGAATATTCATGTTTCTGGGCATGGTTTTCAAGAAGATCAAAAGTTAATGTTGGCACTT
GCAAAACCTAAGTTTTTTGTTCCTGTTCATGGAGAACATAGAATGCTTGTTTGTCATGGTAAGAGTGCACAAACTATGGG
GGTTCCAAAGGACAATATTTTAATTATTGAAAATGGAGATGTAGTTGAGTTAACTCCTAATTCTATTCAAAAGGGTGATC
CTGTAAAAGCTGGTGTTGAACTGCTTGATAACTCACGAAATGGGATAGTAGATGCTCGAGTTTTAAAGGAAAGGCAGCAA
TTAGCTGGAGATGGTGTAGTAACTGTTTTAGCTCCTATTAGTACAGATGGGAAGATGGTTGCGCCTCCTAGAGTGAATTT
AAGAGGAGTTGTTACTACTGCAGAGCCAAGAAAAATGTCTATGTGGACAGAACGAGAAATAAGCTGGGTCTTAGAAAATA
GATGGAAACAATTATCCAGACAAACTGGGCCTAATAATTTTGAAGTAGATTGGATTGGTGTACAAAGAGAAATTGAAAAT
GGTTTATCGAGAAGAATGAGAAGAGAATTACAAGTTGAACCACTTATTTTGTGTTTAGTTCAACCTGCTCCAAGTGGAAC
TCGTGCTTATATTCCAAAGATTACTGAAGAGCAAAATTCTTCCAATAGAAATAGAAATAATAATTTCCATAAGAAAACAA
ACAATAATCATCCTAATAGTTCAAATAACCCACGAAATACTCAAAAAAGTTCAAAAGTTTCACAGAATCCATCAGCTGAG
ACTGCTACAGAAGATTCATTTGAAGGTAGAACAAGAAGAAGAAGATCTGCTGTCACATCCTAA

Upstream 100 bases:

>100_bases
TTATCCTGACATCGCTATAATAGGGATTATATTTAACTTGATAATTAAATTTAAATAAACCTTATTTGATTACAAGCCGG
CCTTTATAAATTTCAAAATT

Downstream 100 bases:

>100_bases
CTTTTTTCAAAATTTATATAGTTTTTATTCCAAACAATTTTTAAAAACTCTTGCAAGTTTATTTGACCTTTATTTTTTTC
ATAAATTGAAGTTGCTAATT

Product: hypothetical protein

Products: NA

Alternate protein names: RNase J [H]

Number of amino acids: Translated: 660; Mature: 660

Protein sequence:

>660_residues
MQSSSNSTVNRSTNDSSRSKSNTPALRVIPLGGLHEIGKNTCVFEYGDELMLVDAGLAFPSDGMHGVNIVMPDTTFLREN
QRRIKGMIVTHGHEDHIGGISHHLKHFNIPIIYGPRLAMSMLRGKMEEAGVSDRTTIQTVNPRDVVKVGQHFSVEFIRNT
HSICDSFSLAVTTPVGTIIFTGDFKFDHMPVDGEQFDIERMVHYGEKGVLCMFSDSTNAEVPGFCPSEKTIYSSLEKHIA
EAKERVILTTFASSVHRVTMILELAMKHGRKVGLLGRSMINVIAKARDIGYMKCPDDLFVPIKQIRDLPDRETLLLMTGS
QGEPLAALSRISRGEHQHVRLKTTDTVIFSASPIPGNTISVVNTIDRLMKLGAKVVYGKGENIHVSGHGFQEDQKLMLAL
AKPKFFVPVHGEHRMLVCHGKSAQTMGVPKDNILIIENGDVVELTPNSIQKGDPVKAGVELLDNSRNGIVDARVLKERQQ
LAGDGVVTVLAPISTDGKMVAPPRVNLRGVVTTAEPRKMSMWTEREISWVLENRWKQLSRQTGPNNFEVDWIGVQREIEN
GLSRRMRRELQVEPLILCLVQPAPSGTRAYIPKITEEQNSSNRNRNNNFHKKTNNNHPNSSNNPRNTQKSSKVSQNPSAE
TATEDSFEGRTRRRRSAVTS

Sequences:

>Translated_660_residues
MQSSSNSTVNRSTNDSSRSKSNTPALRVIPLGGLHEIGKNTCVFEYGDELMLVDAGLAFPSDGMHGVNIVMPDTTFLREN
QRRIKGMIVTHGHEDHIGGISHHLKHFNIPIIYGPRLAMSMLRGKMEEAGVSDRTTIQTVNPRDVVKVGQHFSVEFIRNT
HSICDSFSLAVTTPVGTIIFTGDFKFDHMPVDGEQFDIERMVHYGEKGVLCMFSDSTNAEVPGFCPSEKTIYSSLEKHIA
EAKERVILTTFASSVHRVTMILELAMKHGRKVGLLGRSMINVIAKARDIGYMKCPDDLFVPIKQIRDLPDRETLLLMTGS
QGEPLAALSRISRGEHQHVRLKTTDTVIFSASPIPGNTISVVNTIDRLMKLGAKVVYGKGENIHVSGHGFQEDQKLMLAL
AKPKFFVPVHGEHRMLVCHGKSAQTMGVPKDNILIIENGDVVELTPNSIQKGDPVKAGVELLDNSRNGIVDARVLKERQQ
LAGDGVVTVLAPISTDGKMVAPPRVNLRGVVTTAEPRKMSMWTEREISWVLENRWKQLSRQTGPNNFEVDWIGVQREIEN
GLSRRMRRELQVEPLILCLVQPAPSGTRAYIPKITEEQNSSNRNRNNNFHKKTNNNHPNSSNNPRNTQKSSKVSQNPSAE
TATEDSFEGRTRRRRSAVTS
>Mature_660_residues
MQSSSNSTVNRSTNDSSRSKSNTPALRVIPLGGLHEIGKNTCVFEYGDELMLVDAGLAFPSDGMHGVNIVMPDTTFLREN
QRRIKGMIVTHGHEDHIGGISHHLKHFNIPIIYGPRLAMSMLRGKMEEAGVSDRTTIQTVNPRDVVKVGQHFSVEFIRNT
HSICDSFSLAVTTPVGTIIFTGDFKFDHMPVDGEQFDIERMVHYGEKGVLCMFSDSTNAEVPGFCPSEKTIYSSLEKHIA
EAKERVILTTFASSVHRVTMILELAMKHGRKVGLLGRSMINVIAKARDIGYMKCPDDLFVPIKQIRDLPDRETLLLMTGS
QGEPLAALSRISRGEHQHVRLKTTDTVIFSASPIPGNTISVVNTIDRLMKLGAKVVYGKGENIHVSGHGFQEDQKLMLAL
AKPKFFVPVHGEHRMLVCHGKSAQTMGVPKDNILIIENGDVVELTPNSIQKGDPVKAGVELLDNSRNGIVDARVLKERQQ
LAGDGVVTVLAPISTDGKMVAPPRVNLRGVVTTAEPRKMSMWTEREISWVLENRWKQLSRQTGPNNFEVDWIGVQREIEN
GLSRRMRRELQVEPLILCLVQPAPSGTRAYIPKITEEQNSSNRNRNNNFHKKTNNNHPNSSNNPRNTQKSSKVSQNPSAE
TATEDSFEGRTRRRRSAVTS

Specific function: Unknown

COG id: COG0595

COG function: function code R; Predicted hydrolase of the metallo-beta-lactamase superfamily

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family. RNase J subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279
- InterPro:   IPR011108
- InterPro:   IPR004613
- InterPro:   IPR001587 [H]

Pfam domain/function: PF00753 Lactamase_B; PF07521 RMMBL [H]

EC number: NA

Molecular weight: Translated: 73361; Mature: 73361

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: PS01292 UPF0036

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSSSNSTVNRSTNDSSRSKSNTPALRVIPLGGLHEIGKNTCVFEYGDELMLVDAGLAFP
CCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHCCCCEEEEECCEEEEEECCCCCC
SDGMHGVNIVMPDTTFLRENQRRIKGMIVTHGHEDHIGGISHHLKHFNIPIIYGPRLAMS
CCCCCCEEEEECCHHHHHHHHHHEEEEEEECCCCCCCCHHHHHHHHCCCCEEECCHHHHH
MLRGKMEEAGVSDRTTIQTVNPRDVVKVGQHFSVEFIRNTHSICDSFSLAVTTPVGTIIF
HHHHHHHHCCCCCCCEEEECCCHHHHHHCCCCEEHHHHHHHHHHCCCCEEEECCCEEEEE
TGDFKFDHMPVDGEQFDIERMVHYGEKGVLCMFSDSTNAEVPGFCPSEKTIYSSLEKHIA
ECCCEECCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH
EAKERVILTTFASSVHRVTMILELAMKHGRKVGLLGRSMINVIAKARDIGYMKCPDDLFV
HHHHCEEEEHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHCCCCEECCHHHHH
PIKQIRDLPDRETLLLMTGSQGEPLAALSRISRGEHQHVRLKTTDTVIFSASPIPGNTIS
HHHHHCCCCCCCEEEEEECCCCCHHHHHHHHCCCCCCEEEEEEEEEEEEECCCCCCCHHH
VVNTIDRLMKLGAKVVYGKGENIHVSGHGFQEDQKLMLALAKPKFFVPVHGEHRMLVCHG
HHHHHHHHHHCCCEEEEECCCEEEEECCCCCCCCCEEEEECCCCEEEEECCCCEEEEEEC
KSAQTMGVPKDNILIIENGDVVELTPNSIQKGDPVKAGVELLDNSRNGIVDARVLKERQQ
CCCCCCCCCCCCEEEEECCCEEEECCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHH
LAGDGVVTVLAPISTDGKMVAPPRVNLRGVVTTAEPRKMSMWTEREISWVLENRWKQLSR
HCCCCEEEEEEEECCCCCEECCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHH
QTGPNNFEVDWIGVQREIENGLSRRMRRELQVEPLILCLVQPAPSGTRAYIPKITEEQNS
HCCCCCEEEEEEEHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEECCCCCCCCCC
SNRNRNNNFHKKTNNNHPNSSNNPRNTQKSSKVSQNPSAETATEDSFEGRTRRRRSAVTS
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCC
>Mature Secondary Structure
MQSSSNSTVNRSTNDSSRSKSNTPALRVIPLGGLHEIGKNTCVFEYGDELMLVDAGLAFP
CCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHCCCCEEEEECCEEEEEECCCCCC
SDGMHGVNIVMPDTTFLRENQRRIKGMIVTHGHEDHIGGISHHLKHFNIPIIYGPRLAMS
CCCCCCEEEEECCHHHHHHHHHHEEEEEEECCCCCCCCHHHHHHHHCCCCEEECCHHHHH
MLRGKMEEAGVSDRTTIQTVNPRDVVKVGQHFSVEFIRNTHSICDSFSLAVTTPVGTIIF
HHHHHHHHCCCCCCCEEEECCCHHHHHHCCCCEEHHHHHHHHHHCCCCEEEECCCEEEEE
TGDFKFDHMPVDGEQFDIERMVHYGEKGVLCMFSDSTNAEVPGFCPSEKTIYSSLEKHIA
ECCCEECCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH
EAKERVILTTFASSVHRVTMILELAMKHGRKVGLLGRSMINVIAKARDIGYMKCPDDLFV
HHHHCEEEEHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHCCCCEECCHHHHH
PIKQIRDLPDRETLLLMTGSQGEPLAALSRISRGEHQHVRLKTTDTVIFSASPIPGNTIS
HHHHHCCCCCCCEEEEEECCCCCHHHHHHHHCCCCCCEEEEEEEEEEEEECCCCCCCHHH
VVNTIDRLMKLGAKVVYGKGENIHVSGHGFQEDQKLMLALAKPKFFVPVHGEHRMLVCHG
HHHHHHHHHHCCCEEEEECCCEEEEECCCCCCCCCEEEEECCCCEEEEECCCCEEEEEEC
KSAQTMGVPKDNILIIENGDVVELTPNSIQKGDPVKAGVELLDNSRNGIVDARVLKERQQ
CCCCCCCCCCCCEEEEECCCEEEECCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHH
LAGDGVVTVLAPISTDGKMVAPPRVNLRGVVTTAEPRKMSMWTEREISWVLENRWKQLSR
HCCCCEEEEEEEECCCCCEECCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHH
QTGPNNFEVDWIGVQREIENGLSRRMRRELQVEPLILCLVQPAPSGTRAYIPKITEEQNS
HCCCCCEEEEEEEHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEECCCCCCCCCC
SNRNRNNNFHKKTNNNHPNSSNNPRNTQKSSKVSQNPSAETATEDSFEGRTRRRRSAVTS
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]