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The map label for this gene is yebA [C]

Identifier: 78484697

GI number: 78484697

Start: 400533

End: 401825

Strand: Reverse

Name: yebA [C]

Synonym: Tcr_0352

Alternate gene names: 78484697

Gene position: 401825-400533 (Counterclockwise)

Preceding gene: 78484698

Following gene: 78484696

Centisome position: 16.55

GC content: 43.39

Gene sequence:

>1293_bases
ATGAAAATTAAGCCAGTGATTAAAGCCAAAACAACGTTACAATTTTTATTGTTAATTTCACTTATTTTCTTGTTTGTTGT
TCAGTTCGCCACTGCATCGCAATCACCGGAAAGATATGCCCTGCCTCTACCGCCAGTTGACCTATCCAGTCAAGAAAGCC
ATACACTCGATAAACAAAACGCCAACTGGACAAAACATGTCGTTAAAATCAAAAAAAATGGCTCTTTGTCAGAAGCGTTA
GACTCTGTAGGTTTATCGCCTGTTGTCAGTTTTCAGATTGCCGACACGAAACACGGGCAATGGCTCACGCAACTTCGCGC
AGGTGATACATTGGAAATTTGGCTGGATAAAGCCAACCAACTTCAAAAAATTCACTACCCAAAGCGCACATCGGTTCACT
ACCAGCTGACTCGAAAAAACGACCAATTCAACATTCAAAAAATCGAATACCCGGTTGAAACTAAAATTCAAACAGCGTCC
GGCACCATTAAACATTCTTTTTACCAAAGCGGAAAAGATGAAGGACTCAGTGCCCAAACTATTATGAATTTGGCCGATAT
TTTTTCATGGGAAATTGATTTTATTCGCCAGCTAAGACCCGGTGATCCTTTTAAAGTGATCTATGAAAAGAAATTCATCA
ATGGTCAGTATGTGGGGGATGGCGATATTCTGGCGGCTGAAGTGACAACCAATGGCGACCAACTGCATACGGCTTTCTTG
CTTCGAGATCAAAATGGCGAAAAAGTAGGTTACTATGATCAACACAAACGCAATCTAAGAAAAGCATTCCTTAGAAACCC
GGTCGATTATGTTCGCATTACGTCCCGTTACAAGCCAAAACGTTACCACCCGGTTCTTAAAAAATGGCGTGCTCATAGAG
GGGTCGATTATGGTGGCCCGATCGGTACCCCGATTCATGTAACCGGAGACGGACAAATCATCAAACGCCGTTGGAGCCGC
AGTTACGGTCGAGTGATTTATGTCAAGCATGCTGGCCGATATGTGACGGTCTATGCGCACATGTCAAAATTTGGAAAATA
CCGCCAAGGTGAGTGGGTTCGTCAAGGGCAAGTCATCGGCTATATCGGGCAAAGCGGATTAGCGTCAGGGCCGCATCTAC
ATTATGAATTCCGTAAAAAAGGCCACCATGTGGATCCTTTAAGAGTTAAATTCCCAGATGCCGGACCGGTTCCTAAAAAA
TACCGCCGTCAATTTATCCAATATGCAGAATTGATGTCAGCACAACTGGATCGATTGAATCCACACACACAACTGGTGTC
AAACTTTGAGTAA

Upstream 100 bases:

>100_bases
TCAATTATTTAACTCGCACAAACCCAATTTCTTTAGGTATAATCGAAGACAGGTCTAAGTTAAAACGCGTTAACTTAATT
ATTTTTTTATCGTATTTCAT

Downstream 100 bases:

>100_bases
CCCGCCATCGAAGCTGTACATCGGGCTAATGTCCGGCACCAGTTTAGATGGCGTGGATGCGGCCCTAGTCAGCATTCAAA
ATGGTGAGCTCGAACTAAAA

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 430; Mature: 430

Protein sequence:

>430_residues
MKIKPVIKAKTTLQFLLLISLIFLFVVQFATASQSPERYALPLPPVDLSSQESHTLDKQNANWTKHVVKIKKNGSLSEAL
DSVGLSPVVSFQIADTKHGQWLTQLRAGDTLEIWLDKANQLQKIHYPKRTSVHYQLTRKNDQFNIQKIEYPVETKIQTAS
GTIKHSFYQSGKDEGLSAQTIMNLADIFSWEIDFIRQLRPGDPFKVIYEKKFINGQYVGDGDILAAEVTTNGDQLHTAFL
LRDQNGEKVGYYDQHKRNLRKAFLRNPVDYVRITSRYKPKRYHPVLKKWRAHRGVDYGGPIGTPIHVTGDGQIIKRRWSR
SYGRVIYVKHAGRYVTVYAHMSKFGKYRQGEWVRQGQVIGYIGQSGLASGPHLHYEFRKKGHHVDPLRVKFPDAGPVPKK
YRRQFIQYAELMSAQLDRLNPHTQLVSNFE

Sequences:

>Translated_430_residues
MKIKPVIKAKTTLQFLLLISLIFLFVVQFATASQSPERYALPLPPVDLSSQESHTLDKQNANWTKHVVKIKKNGSLSEAL
DSVGLSPVVSFQIADTKHGQWLTQLRAGDTLEIWLDKANQLQKIHYPKRTSVHYQLTRKNDQFNIQKIEYPVETKIQTAS
GTIKHSFYQSGKDEGLSAQTIMNLADIFSWEIDFIRQLRPGDPFKVIYEKKFINGQYVGDGDILAAEVTTNGDQLHTAFL
LRDQNGEKVGYYDQHKRNLRKAFLRNPVDYVRITSRYKPKRYHPVLKKWRAHRGVDYGGPIGTPIHVTGDGQIIKRRWSR
SYGRVIYVKHAGRYVTVYAHMSKFGKYRQGEWVRQGQVIGYIGQSGLASGPHLHYEFRKKGHHVDPLRVKFPDAGPVPKK
YRRQFIQYAELMSAQLDRLNPHTQLVSNFE
>Mature_430_residues
MKIKPVIKAKTTLQFLLLISLIFLFVVQFATASQSPERYALPLPPVDLSSQESHTLDKQNANWTKHVVKIKKNGSLSEAL
DSVGLSPVVSFQIADTKHGQWLTQLRAGDTLEIWLDKANQLQKIHYPKRTSVHYQLTRKNDQFNIQKIEYPVETKIQTAS
GTIKHSFYQSGKDEGLSAQTIMNLADIFSWEIDFIRQLRPGDPFKVIYEKKFINGQYVGDGDILAAEVTTNGDQLHTAFL
LRDQNGEKVGYYDQHKRNLRKAFLRNPVDYVRITSRYKPKRYHPVLKKWRAHRGVDYGGPIGTPIHVTGDGQIIKRRWSR
SYGRVIYVKHAGRYVTVYAHMSKFGKYRQGEWVRQGQVIGYIGQSGLASGPHLHYEFRKKGHHVDPLRVKFPDAGPVPKK
YRRQFIQYAELMSAQLDRLNPHTQLVSNFE

Specific function: Could Be Involved In Cell Wall Degradation Or Formation. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M23B family [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=404, Percent_Identity=27.4752475247525, Blast_Score=150, Evalue=2e-37,
Organism=Escherichia coli, GI87082174, Length=110, Percent_Identity=35.4545454545455, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1789099, Length=99, Percent_Identity=36.3636363636364, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR007340
- InterPro:   IPR016047
- InterPro:   IPR002886 [H]

Pfam domain/function: PF04225 OapA; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 49484; Mature: 49484

Theoretical pI: Translated: 10.42; Mature: 10.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIKPVIKAKTTLQFLLLISLIFLFVVQFATASQSPERYALPLPPVDLSSQESHTLDKQN
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCC
ANWTKHVVKIKKNGSLSEALDSVGLSPVVSFQIADTKHGQWLTQLRAGDTLEIWLDKANQ
CCCEEEEEEEECCCCHHHHHHHCCCCEEEEEEEECCCCCHHHHHHCCCCEEEEEECCHHH
LQKIHYPKRTSVHYQLTRKNDQFNIQKIEYPVETKIQTASGTIKHSFYQSGKDEGLSAQT
HHHHCCCCCCCEEEEEECCCCCEEEEEEECCCCCEEECCCCCHHHHHHHCCCCCCCCHHH
IMNLADIFSWEIDFIRQLRPGDPFKVIYEKKFINGQYVGDGDILAAEVTTNGDQLHTAFL
HHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEECCCCEEEEEEECCCCEEEEEEE
LRDQNGEKVGYYDQHKRNLRKAFLRNPVDYVRITSRYKPKRYHPVLKKWRAHRGVDYGGP
EECCCCCCCCCHHHHHHHHHHHHHHCCHHHEEECCCCCCCHHHHHHHHHHHHCCCCCCCC
IGTPIHVTGDGQIIKRRWSRSYGRVIYVKHAGRYVTVYAHMSKFGKYRQGEWVRQGQVIG
CCCEEEECCCCHHHHHHHCCCCCCEEEEEECCCEEEEEEEHHHHCCCCCCCHHHCCCEEE
YIGQSGLASGPHLHYEFRKKGHHVDPLRVKFPDAGPVPKKYRRQFIQYAELMSAQLDRLN
EECCCCCCCCCCEEEHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
PHTQLVSNFE
HHHHHHCCCC
>Mature Secondary Structure
MKIKPVIKAKTTLQFLLLISLIFLFVVQFATASQSPERYALPLPPVDLSSQESHTLDKQN
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCC
ANWTKHVVKIKKNGSLSEALDSVGLSPVVSFQIADTKHGQWLTQLRAGDTLEIWLDKANQ
CCCEEEEEEEECCCCHHHHHHHCCCCEEEEEEEECCCCCHHHHHHCCCCEEEEEECCHHH
LQKIHYPKRTSVHYQLTRKNDQFNIQKIEYPVETKIQTASGTIKHSFYQSGKDEGLSAQT
HHHHCCCCCCCEEEEEECCCCCEEEEEEECCCCCEEECCCCCHHHHHHHCCCCCCCCHHH
IMNLADIFSWEIDFIRQLRPGDPFKVIYEKKFINGQYVGDGDILAAEVTTNGDQLHTAFL
HHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEECCCCEEEEEEECCCCEEEEEEE
LRDQNGEKVGYYDQHKRNLRKAFLRNPVDYVRITSRYKPKRYHPVLKKWRAHRGVDYGGP
EECCCCCCCCCHHHHHHHHHHHHHHCCHHHEEECCCCCCCHHHHHHHHHHHHCCCCCCCC
IGTPIHVTGDGQIIKRRWSRSYGRVIYVKHAGRYVTVYAHMSKFGKYRQGEWVRQGQVIG
CCCEEEECCCCHHHHHHHCCCCCCEEEEEECCCEEEEEEEHHHHCCCCCCCHHHCCCEEE
YIGQSGLASGPHLHYEFRKKGHHVDPLRVKFPDAGPVPKKYRRQFIQYAELMSAQLDRLN
EECCCCCCCCCCEEEHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
PHTQLVSNFE
HHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]