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The map label for this gene is 78484421

Identifier: 78484421

GI number: 78484421

Start: 94732

End: 95646

Strand: Reverse

Name: 78484421

Synonym: Tcr_0075

Alternate gene names: NA

Gene position: 95646-94732 (Counterclockwise)

Preceding gene: 78484422

Following gene: 78484420

Centisome position: 3.94

GC content: 45.46

Gene sequence:

>915_bases
ATGTCTGATCACGCTGACATTTATTCACAACTGGATGAACTCATTGGGTTGAGGTTTCACGTGAAACAACATCATCTGGT
GTCACAACAGAAACTGATTTCAGAAAAAGGCGGTTACCATCAAGCGGTGCGAAAAGGGCGAGGCATGGAATTCAACGAAG
TTCGTGAATACGCGGCCGGAGATGATGTACGCCATATTGATTGGAAAGTAAGTGCCCGCACACAAACCACCCACACCAAA
GTTTTTACCGAAGAACTGGAAAAGCCCGTCATTTGCTTGGTGGAACAAACGCCTCCGTTGTTTTTTGGTTCGAAAATCCG
TTTCAAAAGCAGCCAGGCACTCAATGTCATGGCTCTAATTGGTTGGATCAGCTTACAACAAGGCGATCGTTTTGGTGGGT
TTGTATTCAATCATTTGAACCAACACTGGGTGGAGCCGCGCCATAACGGAAAAACCATGATGCAATTGTTGCACCAAAGC
CTGGCTCTACAGCAGCAACTTAAATCGCCGGCGGCCTTGTCACAGGATTTATGGCTATTGCATTTAACCCGATTACAAAA
ACACTTACGCCCCGGCAGCCGAGTGTTTTTAATCGGTGATTTTTTGAACAGCAGCGAGGCGTTTATTAAAAAACTGGCTC
AGTTAAAAAAACATGCCGACATCAATTTGATTCACATCTATGACCCATTAGAAAAAACACTCCCTTCCAGTGGCACCTTA
AAAATCACTGACGGACAAGCTGAAATGGGGTTGAACACACTGGATACCGCTTTTAAAAATGCCTATCAGGCCACTTACCA
GCACGCTTGGAAAGTCTTAAAACACCAACTGCTGCCTTGGCATTTTCCCCTCATGGAAGTCGCCACACCGCAAGATCCGC
TTCAAGCACTCATATCACAAGGAGTGGTTCGATAA

Upstream 100 bases:

>100_bases
CTTTGAAGCGGAGGCAAATGGATTGACCCCTGACGCCATTATTGACCAGATCTTGAAACGCGTTCCCGTTATTTAATCGC
ACGAATCACAGGACTTTTTC

Downstream 100 bases:

>100_bases
TGGATCCGAAAACGGCGCAATTACTGTCACAACTAAAAGACATCCAAGTGCCGGATCCCGTCGGATGGTGGCCTTTGTCA
CAAACATTGATTGGTTTGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 303

Protein sequence:

>304_residues
MSDHADIYSQLDELIGLRFHVKQHHLVSQQKLISEKGGYHQAVRKGRGMEFNEVREYAAGDDVRHIDWKVSARTQTTHTK
VFTEELEKPVICLVEQTPPLFFGSKIRFKSSQALNVMALIGWISLQQGDRFGGFVFNHLNQHWVEPRHNGKTMMQLLHQS
LALQQQLKSPAALSQDLWLLHLTRLQKHLRPGSRVFLIGDFLNSSEAFIKKLAQLKKHADINLIHIYDPLEKTLPSSGTL
KITDGQAEMGLNTLDTAFKNAYQATYQHAWKVLKHQLLPWHFPLMEVATPQDPLQALISQGVVR

Sequences:

>Translated_304_residues
MSDHADIYSQLDELIGLRFHVKQHHLVSQQKLISEKGGYHQAVRKGRGMEFNEVREYAAGDDVRHIDWKVSARTQTTHTK
VFTEELEKPVICLVEQTPPLFFGSKIRFKSSQALNVMALIGWISLQQGDRFGGFVFNHLNQHWVEPRHNGKTMMQLLHQS
LALQQQLKSPAALSQDLWLLHLTRLQKHLRPGSRVFLIGDFLNSSEAFIKKLAQLKKHADINLIHIYDPLEKTLPSSGTL
KITDGQAEMGLNTLDTAFKNAYQATYQHAWKVLKHQLLPWHFPLMEVATPQDPLQALISQGVVR
>Mature_303_residues
SDHADIYSQLDELIGLRFHVKQHHLVSQQKLISEKGGYHQAVRKGRGMEFNEVREYAAGDDVRHIDWKVSARTQTTHTKV
FTEELEKPVICLVEQTPPLFFGSKIRFKSSQALNVMALIGWISLQQGDRFGGFVFNHLNQHWVEPRHNGKTMMQLLHQSL
ALQQQLKSPAALSQDLWLLHLTRLQKHLRPGSRVFLIGDFLNSSEAFIKKLAQLKKHADINLIHIYDPLEKTLPSSGTLK
ITDGQAEMGLNTLDTAFKNAYQATYQHAWKVLKHQLLPWHFPLMEVATPQDPLQALISQGVVR

Specific function: Unknown

COG id: COG1721

COG function: function code R; Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To M.avium MAV169 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002881
- InterPro:   IPR002035 [H]

Pfam domain/function: PF01882 DUF58 [H]

EC number: NA

Molecular weight: Translated: 34772; Mature: 34640

Theoretical pI: Translated: 9.82; Mature: 9.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDHADIYSQLDELIGLRFHVKQHHLVSQQKLISEKGGYHQAVRKGRGMEFNEVREYAAG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHCC
DDVRHIDWKVSARTQTTHTKVFTEELEKPVICLVEQTPPLFFGSKIRFKSSQALNVMALI
CCCEEEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCEECCEEEECCCCHHHHHHHH
GWISLQQGDRFGGFVFNHLNQHWVEPRHNGKTMMQLLHQSLALQQQLKSPAALSQDLWLL
HHHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
HLTRLQKHLRPGSRVFLIGDFLNSSEAFIKKLAQLKKHADINLIHIYDPLEKTLPSSGTL
HHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHCCCCCEE
KITDGQAEMGLNTLDTAFKNAYQATYQHAWKVLKHQLLPWHFPLMEVATPQDPLQALISQ
EEECCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHC
GVVR
CCCC
>Mature Secondary Structure 
SDHADIYSQLDELIGLRFHVKQHHLVSQQKLISEKGGYHQAVRKGRGMEFNEVREYAAG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHCC
DDVRHIDWKVSARTQTTHTKVFTEELEKPVICLVEQTPPLFFGSKIRFKSSQALNVMALI
CCCEEEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCEECCEEEECCCCHHHHHHHH
GWISLQQGDRFGGFVFNHLNQHWVEPRHNGKTMMQLLHQSLALQQQLKSPAALSQDLWLL
HHHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
HLTRLQKHLRPGSRVFLIGDFLNSSEAFIKKLAQLKKHADINLIHIYDPLEKTLPSSGTL
HHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHCCCCCEE
KITDGQAEMGLNTLDTAFKNAYQATYQHAWKVLKHQLLPWHFPLMEVATPQDPLQALISQ
EEECCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHC
GVVR
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]