Click here to switch to the map view.

The map label for this gene is 78484420

Identifier: 78484420

GI number: 78484420

Start: 94253

End: 94732

Strand: Reverse

Name: 78484420

Synonym: Tcr_0074

Alternate gene names: NA

Gene position: 94732-94253 (Counterclockwise)

Preceding gene: 78484421

Following gene: 78484419

Centisome position: 3.9

GC content: 46.25

Gene sequence:

>480_bases
ATGGATCCGAAAACGGCGCAATTACTGTCACAACTAAAAGACATCCAAGTGCCGGATCCCGTCGGATGGTGGCCTTTGTC
ACAAACATTGATTGGTTTGTTTGTCGGTTTAGGCGGCATTCTGATCGGACTTAGCTGGTATTACCTAACCCAACGCAAAA
ACAACCGTTATCGACAAGAAGCACTGCTCGCGTTTAAAAAAGCGTTAGCTTCGGCCAACAACGCGCAAGAAAAACTGCAA
GTGGCCAATCAGCTGCTTAAACAAGTCGCCATTACCAATTATGGTCGCCCCAATGTGGCAAACCTGAGCGGGCAGGCCTG
GGTAGATTTTTTACAGAAAACCGCCCTTTATATTGATCAACCAGACTCCTTACAACATTGCTTAGAATCCATTTATCGTC
CAAACTCGTCTTTGTCGGACGCCGAAACCCAACAAGCATTGGAGTATGCGATGCAATGGATCAAAGGACACCATAAATGA

Upstream 100 bases:

>100_bases
TCTTAAAACACCAACTGCTGCCTTGGCATTTTCCCCTCATGGAAGTCGCCACACCGCAAGATCCGCTTCAAGCACTCATA
TCACAAGGAGTGGTTCGATA

Downstream 100 bases:

>100_bases
ACCTGACTGATCTAACCAGCATTTGGCAACAATTTGAATTTATTTGGCCGTGGATGATTGCGTTTGCGCCGCTACCATGG
CTTATCAGAATACTCTTAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 159; Mature: 159

Protein sequence:

>159_residues
MDPKTAQLLSQLKDIQVPDPVGWWPLSQTLIGLFVGLGGILIGLSWYYLTQRKNNRYRQEALLAFKKALASANNAQEKLQ
VANQLLKQVAITNYGRPNVANLSGQAWVDFLQKTALYIDQPDSLQHCLESIYRPNSSLSDAETQQALEYAMQWIKGHHK

Sequences:

>Translated_159_residues
MDPKTAQLLSQLKDIQVPDPVGWWPLSQTLIGLFVGLGGILIGLSWYYLTQRKNNRYRQEALLAFKKALASANNAQEKLQ
VANQLLKQVAITNYGRPNVANLSGQAWVDFLQKTALYIDQPDSLQHCLESIYRPNSSLSDAETQQALEYAMQWIKGHHK
>Mature_159_residues
MDPKTAQLLSQLKDIQVPDPVGWWPLSQTLIGLFVGLGGILIGLSWYYLTQRKNNRYRQEALLAFKKALASANNAQEKLQ
VANQLLKQVAITNYGRPNVANLSGQAWVDFLQKTALYIDQPDSLQHCLESIYRPNSSLSDAETQQALEYAMQWIKGHHK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17968; Mature: 17968

Theoretical pI: Translated: 9.31; Mature: 9.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDPKTAQLLSQLKDIQVPDPVGWWPLSQTLIGLFVGLGGILIGLSWYYLTQRKNNRYRQE
CCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
ALLAFKKALASANNAQEKLQVANQLLKQVAITNYGRPNVANLSGQAWVDFLQKTALYIDQ
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC
PDSLQHCLESIYRPNSSLSDAETQQALEYAMQWIKGHHK
CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDPKTAQLLSQLKDIQVPDPVGWWPLSQTLIGLFVGLGGILIGLSWYYLTQRKNNRYRQE
CCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
ALLAFKKALASANNAQEKLQVANQLLKQVAITNYGRPNVANLSGQAWVDFLQKTALYIDQ
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC
PDSLQHCLESIYRPNSSLSDAETQQALEYAMQWIKGHHK
CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA