| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome. |
|---|---|
| Accession | NC_007519 |
| Length | 3,730,232 |
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The map label for this gene is yfbI [C]
Identifier: 78358162
GI number: 78358162
Start: 3112765
End: 3114360
Strand: Direct
Name: yfbI [C]
Synonym: Dde_3122
Alternate gene names: 78358162
Gene position: 3112765-3114360 (Clockwise)
Preceding gene: 78358161
Following gene: 78358163
Centisome position: 83.45
GC content: 60.34
Gene sequence:
>1596_bases TTGCAGAAAAGCCCCGTATGGGAGCGCCGCCCGTGGCTGTGCGCTGCCGCCATCATATCTTTCACAACGCTGGTACGCTT CTGGTTCATCGCCTCCGGCCAGCTTGACCTCGTGCAGGACGAGGCCCAGTACTGGGACTGGACCCGCAGACTCCAGCTTT CCTACTATTCCAAAGGGCCGCTCATCGCGTGGCTCATCAGCATCTGGACCGGTGTTTTCGGCGATACGGAACTGGGCGTG CGCTTTGCCGCCGTGCTCAATTCGTGCCTTGCACAGATACTGCTGTACGCCGGAACCGCACGGCTCATGCGCCGTCCGGT ACTGGGTCTGTGGACACTGGTTGTGGCCAATACCACCCCGCTGTTCATCGCCTCCGGCATTCTGATGACCACTGACAGCC CGCTGCTGGTCTGCTGGACGGGTGCGCTCATGTGCCTGTACTGGATGTCCGTATCATCACGCTCGCCATGGCCTTATGTG CTGCTGGCCCTTTCCATGGCCGCCGGAGTGCTGGCCAAATATATGATGCTGGCCATGCCCGCCGTGGCCCTGCTGTACGC GCTGGGACTCAGACGCCAGCGGCTGCTGCCAGAAGGCATGGTGCCGCGGCTGCTGGCTGCCGTCTGTGCCGGTACGGCCG TGGGTATGCTGCCCATCCTCATATGGAATTTCCAGAACGACTTTGTGGGATTCCGCCATGTGGCCGGTCTGGCCGGTGTG GCTTCGGCCAGCCCCGAACCGCTCATCCGCTTTGACCGCTTTCCGGAATATATCGCCTCGCAGGTCGGCATCATCAGTCC GTGGTGGTTTGTGTTCATGCTGGTGGGCGCATGGCGCGCCCTGCGTGTGTGGCGTACGCCGCGCGCCGGACGCGACATGT ACAGCGGACTGCGCAATGACATGAACGAAGTCCGTCAGTCACTGCTGCTGTCCGCCGCGTTCTGGCCGCTGTGGCTTTTC TTCATAATCTGGAGCTTTCACACCCGCATCTATCCCAACTGGTCGGCCATGAGCTATGTGGCCGGCATCATGCTGTGTGC TTCCGCGCTTGAGCGCAGTGGACAGGCTGTGCGCGAAACAGGCAGGCATCTTTCGCGGCTGCGCATGCGGCGCATCTGGG TTGCCATGGGTGTACTTGTTTTTGTGCTGCTGTACGGGCAGAACTGGCTGCCTCTGCCGCCTGCGTACAACCCGGCGGTA CGGCTGAAAGGCTGGAGCGACCTGAGCGGCAAACTGGAGGAACTGCAGAACAGTCTGCCCCGCCCGGACAAAGTGTTCTA TTTTTCCAAATCATATGACATCACGGCGGCCCTTGCCTTTTACGCACCCGGACAGCCGTTCACTTATTGTGCAGACTTCG GCAGGCGCATGAGTCAGTACGACCTGTGGCCCACTCCTGAAGACAAAAAAGGGTGGGACGCCATTTATGTGCAGAAAGAC AACGGCATAAAACCACAGCTGAAAAGCATGTTTGAGTCATACAGGGTGCTGCGCTACCGCACCACGCACAAAGGCGCCCC CGGGCGCGAATTCACCATTGTGGTGCTGCGCGGCTTCAAAGGCACATGGCCGCGCGAACAACAGGAGCGTTACTGA
Upstream 100 bases:
>100_bases TCTGTGCAGTACCGGACAGGCAGGCTCTGCCCCGCTTACTGGACAGGAGCAGGGCTAGCCGCTAGACTCCGCGCCAAACG ACTCCCCAAAGGTGAAACTC
Downstream 100 bases:
>100_bases TGGCCAGAAGCCGTGATGCACATATATGCGCCCGCTGTGCCGCACATTCCGGCACCTGCTGCCGGATGCAGCCCGGCAAT GAAGAGCTGTGCTTTCCGCT
Product: dolichyl-phosphate-mannose-protein mannosyltransferase family protein
Products: NA
Alternate protein names: Glycosyl Transferase Family Protein; Dolichyl-Phosphate-Mannose-Protein Mannosyltransferase; 4-Amino-4-Deoxy-L-Arabinose Transferase; Glycosyl Transferase; Dolichyl-Phosphate Beta-D-Mannosyltransferase; Glycosyltransferase Family; Undecaprenyl-PhosphomannoseProtein Mannosyltransferase; Dolichol Monophosphate Mannose Synthase; Glycosyltransferase; Family; Glycosyltransferase Protein; Transmembrane Protein; Glycosyl/Arabinosyl/Mannosyl Transferase; Dolichyl-Phosphate Mannosyltransferase
Number of amino acids: Translated: 531; Mature: 531
Protein sequence:
>531_residues MQKSPVWERRPWLCAAAIISFTTLVRFWFIASGQLDLVQDEAQYWDWTRRLQLSYYSKGPLIAWLISIWTGVFGDTELGV RFAAVLNSCLAQILLYAGTARLMRRPVLGLWTLVVANTTPLFIASGILMTTDSPLLVCWTGALMCLYWMSVSSRSPWPYV LLALSMAAGVLAKYMMLAMPAVALLYALGLRRQRLLPEGMVPRLLAAVCAGTAVGMLPILIWNFQNDFVGFRHVAGLAGV ASASPEPLIRFDRFPEYIASQVGIISPWWFVFMLVGAWRALRVWRTPRAGRDMYSGLRNDMNEVRQSLLLSAAFWPLWLF FIIWSFHTRIYPNWSAMSYVAGIMLCASALERSGQAVRETGRHLSRLRMRRIWVAMGVLVFVLLYGQNWLPLPPAYNPAV RLKGWSDLSGKLEELQNSLPRPDKVFYFSKSYDITAALAFYAPGQPFTYCADFGRRMSQYDLWPTPEDKKGWDAIYVQKD NGIKPQLKSMFESYRVLRYRTTHKGAPGREFTIVVLRGFKGTWPREQQERY
Sequences:
>Translated_531_residues MQKSPVWERRPWLCAAAIISFTTLVRFWFIASGQLDLVQDEAQYWDWTRRLQLSYYSKGPLIAWLISIWTGVFGDTELGV RFAAVLNSCLAQILLYAGTARLMRRPVLGLWTLVVANTTPLFIASGILMTTDSPLLVCWTGALMCLYWMSVSSRSPWPYV LLALSMAAGVLAKYMMLAMPAVALLYALGLRRQRLLPEGMVPRLLAAVCAGTAVGMLPILIWNFQNDFVGFRHVAGLAGV ASASPEPLIRFDRFPEYIASQVGIISPWWFVFMLVGAWRALRVWRTPRAGRDMYSGLRNDMNEVRQSLLLSAAFWPLWLF FIIWSFHTRIYPNWSAMSYVAGIMLCASALERSGQAVRETGRHLSRLRMRRIWVAMGVLVFVLLYGQNWLPLPPAYNPAV RLKGWSDLSGKLEELQNSLPRPDKVFYFSKSYDITAALAFYAPGQPFTYCADFGRRMSQYDLWPTPEDKKGWDAIYVQKD NGIKPQLKSMFESYRVLRYRTTHKGAPGREFTIVVLRGFKGTWPREQQERY >Mature_531_residues MQKSPVWERRPWLCAAAIISFTTLVRFWFIASGQLDLVQDEAQYWDWTRRLQLSYYSKGPLIAWLISIWTGVFGDTELGV RFAAVLNSCLAQILLYAGTARLMRRPVLGLWTLVVANTTPLFIASGILMTTDSPLLVCWTGALMCLYWMSVSSRSPWPYV LLALSMAAGVLAKYMMLAMPAVALLYALGLRRQRLLPEGMVPRLLAAVCAGTAVGMLPILIWNFQNDFVGFRHVAGLAGV ASASPEPLIRFDRFPEYIASQVGIISPWWFVFMLVGAWRALRVWRTPRAGRDMYSGLRNDMNEVRQSLLLSAAFWPLWLF FIIWSFHTRIYPNWSAMSYVAGIMLCASALERSGQAVRETGRHLSRLRMRRIWVAMGVLVFVLLYGQNWLPLPPAYNPAV RLKGWSDLSGKLEELQNSLPRPDKVFYFSKSYDITAALAFYAPGQPFTYCADFGRRMSQYDLWPTPEDKKGWDAIYVQKD NGIKPQLKSMFESYRVLRYRTTHKGAPGREFTIVVLRGFKGTWPREQQERY
Specific function: Unknown
COG id: COG1807
COG function: function code M; 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
Gene ontology:
Cell location: Integral membrane protein (Potential) [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 60682; Mature: 60682
Theoretical pI: Translated: 10.22; Mature: 10.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQKSPVWERRPWLCAAAIISFTTLVRFWFIASGQLDLVQDEAQYWDWTRRLQLSYYSKGP CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEEEEECCCC LIAWLISIWTGVFGDTELGVRFAAVLNSCLAQILLYAGTARLMRRPVLGLWTLVVANTTP HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCH LFIASGILMTTDSPLLVCWTGALMCLYWMSVSSRSPWPYVLLALSMAAGVLAKYMMLAMP HHHHCCEEEECCCCEEHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH AVALLYALGLRRQRLLPEGMVPRLLAAVCAGTAVGMLPILIWNFQNDFVGFRHVAGLAGV HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH ASASPEPLIRFDRFPEYIASQVGIISPWWFVFMLVGAWRALRVWRTPRAGRDMYSGLRND CCCCCCCHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH MNEVRQSLLLSAAFWPLWLFFIIWSFHTRIYPNWSAMSYVAGIMLCASALERSGQAVRET HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHH GRHLSRLRMRRIWVAMGVLVFVLLYGQNWLPLPPAYNPAVRLKGWSDLSGKLEELQNSLP HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHCC RPDKVFYFSKSYDITAALAFYAPGQPFTYCADFGRRMSQYDLWPTPEDKKGWDAIYVQKD CCCEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECC NGIKPQLKSMFESYRVLRYRTTHKGAPGREFTIVVLRGFKGTWPREQQERY CCCCHHHHHHHHHHHHHHEECCCCCCCCCCEEEEEEECCCCCCCCHHHCCC >Mature Secondary Structure MQKSPVWERRPWLCAAAIISFTTLVRFWFIASGQLDLVQDEAQYWDWTRRLQLSYYSKGP CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEEEEECCCC LIAWLISIWTGVFGDTELGVRFAAVLNSCLAQILLYAGTARLMRRPVLGLWTLVVANTTP HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCH LFIASGILMTTDSPLLVCWTGALMCLYWMSVSSRSPWPYVLLALSMAAGVLAKYMMLAMP HHHHCCEEEECCCCEEHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH AVALLYALGLRRQRLLPEGMVPRLLAAVCAGTAVGMLPILIWNFQNDFVGFRHVAGLAGV HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH ASASPEPLIRFDRFPEYIASQVGIISPWWFVFMLVGAWRALRVWRTPRAGRDMYSGLRND CCCCCCCHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH MNEVRQSLLLSAAFWPLWLFFIIWSFHTRIYPNWSAMSYVAGIMLCASALERSGQAVRET HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHH GRHLSRLRMRRIWVAMGVLVFVLLYGQNWLPLPPAYNPAVRLKGWSDLSGKLEELQNSLP HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHCC RPDKVFYFSKSYDITAALAFYAPGQPFTYCADFGRRMSQYDLWPTPEDKKGWDAIYVQKD CCCEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECC NGIKPQLKSMFESYRVLRYRTTHKGAPGREFTIVVLRGFKGTWPREQQERY CCCCHHHHHHHHHHHHHHEECCCCCCCCCCEEEEEEECCCCCCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA