Click here to switch to the map view.

The map label for this gene is yddE [C]

Identifier: 78358148

GI number: 78358148

Start: 3098452

End: 3099399

Strand: Reverse

Name: yddE [C]

Synonym: Dde_3108

Alternate gene names: 78358148

Gene position: 3099399-3098452 (Counterclockwise)

Preceding gene: 78358149

Following gene: 78358141

Centisome position: 83.09

GC content: 63.4

Gene sequence:

>948_bases
ATGGAAGAATTCCGGCTGACCGTGCTGCTTGTGGATGCATTCACCCGCACGCCCGGCAGGGGAAACCGCGCGGGTGTGGT
GCTGGATGCCGCGGGATTGTCCGCCGCTGCCATGCAGGCAGTGGCAGCGCTGGTCAATGTGTCGGAGACGGCTTTTATTC
TGCCGGCACCTGCACAGGCCGGGTATGCCGTGCATGTGCGCTATTTCACCCCGCGGGCCGAGGTGCCGGTGTGCGGGCAT
GCCACCGTGGGGGCGCATTATGCGCGGGCACGGGCGCTGGGAATTTCGGACACAACGGTGTCCGCCCTGACCGGCGCGGG
GGTTCTGCCCGTGGATATCCGCGGATCCGGCCGCGGTATGAAGATTGTCATGACGCAGGGCAGGGTGGTGTTTTCTCCGC
CGTGCATACCTGCTGTCAGGCAGGCGGTTCTTAACGCTCTTGGGCTTGATGAAGACGACCTGCTGTCCGGTTTGCCGGTA
CAGGAGGTTTCCACGGGACATTCCAAAATAATGGTGCCGCTGCGCAGAACGGCATTGCTGGACGCCCTGAAGCCGGACAT
GACCGCTCTGACGGAATGCAGCCGTGTCACGGGGTGTAACGGCTTTTTTGTTTTCGGGTTCAACGGCGGGGATGACGAAG
CGCTTATAAACGGGCGCATGTTCGCTCCTGCCATCGGCATTGACGAGGACCCCGTGACGGGGAATGCCAACGGCCCCTGT
GGTGCGTATCTGTCGCATTACGGCAGACTGCCCGCACAGGCGGCGTTTACCTTTTGCGGCAGGCAGGGTGTGGCCATGGG
CAAGGAAGGCATGGTGGAGGTGACTGTCCACCGTGATGAAGACGGTCCGTGCCGTGTGCAGGTAGGCGGGCACGCGGCGG
AAGCCGGCCGGATGGAGGTTGCGCTGCACGTAGAGGACGACGGCCGCATTACGGCCCGCAGTGTCTGA

Upstream 100 bases:

>100_bases
CATGCCCTTCAACCGTCTTGCCGACCGTATCACGGCACTGATTCCTGAAAAGAAATAACGCGCGCGATATTGCCGCGCAT
GGTGCATGGGGGATCATGCC

Downstream 100 bases:

>100_bases
CGGCAGTGCGGCGCAGCCGCGCAGGGCTTTTGCCATGCGGGGCTGAGCCAACTGTACATGTTACCCCCCTGCGCTTTGCT
ATGCGGCGGCGCAGGGGGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MEEFRLTVLLVDAFTRTPGRGNRAGVVLDAAGLSAAAMQAVAALVNVSETAFILPAPAQAGYAVHVRYFTPRAEVPVCGH
ATVGAHYARARALGISDTTVSALTGAGVLPVDIRGSGRGMKIVMTQGRVVFSPPCIPAVRQAVLNALGLDEDDLLSGLPV
QEVSTGHSKIMVPLRRTALLDALKPDMTALTECSRVTGCNGFFVFGFNGGDDEALINGRMFAPAIGIDEDPVTGNANGPC
GAYLSHYGRLPAQAAFTFCGRQGVAMGKEGMVEVTVHRDEDGPCRVQVGGHAAEAGRMEVALHVEDDGRITARSV

Sequences:

>Translated_315_residues
MEEFRLTVLLVDAFTRTPGRGNRAGVVLDAAGLSAAAMQAVAALVNVSETAFILPAPAQAGYAVHVRYFTPRAEVPVCGH
ATVGAHYARARALGISDTTVSALTGAGVLPVDIRGSGRGMKIVMTQGRVVFSPPCIPAVRQAVLNALGLDEDDLLSGLPV
QEVSTGHSKIMVPLRRTALLDALKPDMTALTECSRVTGCNGFFVFGFNGGDDEALINGRMFAPAIGIDEDPVTGNANGPC
GAYLSHYGRLPAQAAFTFCGRQGVAMGKEGMVEVTVHRDEDGPCRVQVGGHAAEAGRMEVALHVEDDGRITARSV
>Mature_315_residues
MEEFRLTVLLVDAFTRTPGRGNRAGVVLDAAGLSAAAMQAVAALVNVSETAFILPAPAQAGYAVHVRYFTPRAEVPVCGH
ATVGAHYARARALGISDTTVSALTGAGVLPVDIRGSGRGMKIVMTQGRVVFSPPCIPAVRQAVLNALGLDEDDLLSGLPV
QEVSTGHSKIMVPLRRTALLDALKPDMTALTECSRVTGCNGFFVFGFNGGDDEALINGRMFAPAIGIDEDPVTGNANGPC
GAYLSHYGRLPAQAAFTFCGRQGVAMGKEGMVEVTVHRDEDGPCRVQVGGHAAEAGRMEVALHVEDDGRITARSV

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Homo sapiens, GI62177133, Length=286, Percent_Identity=28.6713286713287, Blast_Score=89, Evalue=6e-18,
Organism=Homo sapiens, GI74316009, Length=258, Percent_Identity=29.8449612403101, Blast_Score=86, Evalue=4e-17,
Organism=Escherichia coli, GI1787737, Length=298, Percent_Identity=47.986577181208, Blast_Score=261, Evalue=3e-71,
Organism=Saccharomyces cerevisiae, GI6321818, Length=297, Percent_Identity=25.2525252525253, Blast_Score=84, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 32882; Mature: 32882

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEEFRLTVLLVDAFTRTPGRGNRAGVVLDAAGLSAAAMQAVAALVNVSETAFILPAPAQA
CCCEEEEEEEEEEHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCC
GYAVHVRYFTPRAEVPVCGHATVGAHYARARALGISDTTVSALTGAGVLPVDIRGSGRGM
CEEEEEEEECCCCCCCCCCCCHHCHHHHHHEEECCCCCHHHHHCCCCEEEEEECCCCCCE
KIVMTQGRVVFSPPCIPAVRQAVLNALGLDEDDLLSGLPVQEVSTGHSKIMVPLRRTALL
EEEEECCEEEECCCCHHHHHHHHHHHHCCCHHHHHCCCCHHHHCCCCCEEEEEHHHHHHH
DALKPDMTALTECSRVTGCNGFFVFGFNGGDDEALINGRMFAPAIGIDEDPVTGNANGPC
HHCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCEEECCEEEECCCCCCCCCCCCCCCCCH
GAYLSHYGRLPAQAAFTFCGRQGVAMGKEGMVEVTVHRDEDGPCRVQVGGHAAEAGRMEV
HHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCCCCEEE
ALHVEDDGRITARSV
EEEECCCCCEEEECC
>Mature Secondary Structure
MEEFRLTVLLVDAFTRTPGRGNRAGVVLDAAGLSAAAMQAVAALVNVSETAFILPAPAQA
CCCEEEEEEEEEEHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCC
GYAVHVRYFTPRAEVPVCGHATVGAHYARARALGISDTTVSALTGAGVLPVDIRGSGRGM
CEEEEEEEECCCCCCCCCCCCHHCHHHHHHEEECCCCCHHHHHCCCCEEEEEECCCCCCE
KIVMTQGRVVFSPPCIPAVRQAVLNALGLDEDDLLSGLPVQEVSTGHSKIMVPLRRTALL
EEEEECCEEEECCCCHHHHHHHHHHHHCCCHHHHHCCCCHHHHCCCCCEEEEEHHHHHHH
DALKPDMTALTECSRVTGCNGFFVFGFNGGDDEALINGRMFAPAIGIDEDPVTGNANGPC
HHCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCEEECCEEEECCCCCCCCCCCCCCCCCH
GAYLSHYGRLPAQAAFTFCGRQGVAMGKEGMVEVTVHRDEDGPCRVQVGGHAAEAGRMEV
HHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCCCCEEE
ALHVEDDGRITARSV
EEEECCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11466286 [H]