| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome. |
|---|---|
| Accession | NC_007519 |
| Length | 3,730,232 |
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The map label for this gene is kinA [H]
Identifier: 78358078
GI number: 78358078
Start: 3025544
End: 3027853
Strand: Reverse
Name: kinA [H]
Synonym: Dde_3038
Alternate gene names: 78358078
Gene position: 3027853-3025544 (Counterclockwise)
Preceding gene: 78358079
Following gene: 78358076
Centisome position: 81.17
GC content: 60.78
Gene sequence:
>2310_bases ATGATGAACAGTGTTTCGGAAGGGATGAAAGAGTATACAGGCTGCCCTGTGGCTGATGAACTGCTGCTGGCAGGTCTGGA TGACCCGCTGCTGATAGTTGCCGCGGACAGCGGGCATATGCTGTGGACAAATCAGCAGGGGGCCGTGTGGTGCGGGCTTT ATGCGGCAGAGACTGCTGCGGTGCAGGGAATACCGCCTGCGCTGGCGTCCGGATGGCAGCATCTTACGGGGCTTACGGTG TGCGGCAGGCTTTGTTGTGCCGACGCGCTGGCAGTACAGTGGCGCGGACGGCGGGCAGTGCTGCTGCGGGGCCGCACGGA CACCGGAAAAAAGGAGCCGCCTGCGGAAAATGCGCAGGCCGGTGTGGGGGCACCCTGTGCGCCGCGGCGTGAAGACGAAC GGTACCGCATTGTGTACGACACCATGGCGCAGGGAGTTGTCTTTCAGGACAGAACGGGAAGCATTGTATGCGCCAACGCT GCTGCCGAACGTCTGCTGGGGCTCGGAAGCGATGCCATGCGCGGCATGGATAGCCATTCCGGAAGCTGGCAGGCGGTGGA TGTTGACGGAAGTCCGTTGCCGGGCAGCGCTCATCCTTCCATGGTTGCGCTGCGTACGGGACGTCCGGTGTCCGGCCGGG TAATGGGCATCCGCCACCAGACAACCGGAGCCCAGCGGTGGCTGGTGGTCAGTGCCACACCGCTTTTCACCGGCGGCGGC AGCGTTCCGGCGGAAGTCTTTTCCACGTTTGAGGATATTACCGAACTGGCAGCGGCCCGCCGGGAGCTTGCCCTGTACAG TGAACGCCTTCAGCAGGTAATCGACAGGTCGCCTCTGGGGGTGTTCCTGTGGCAGTATCAGGACGGCCGTTTTACTTTTC TGCATGGTAATCCCGCATCGGAAGCCATGCTGGGCATAACGGTGGCGGAGTATGCCGGGCAGGAACTGCTGGAAATGCTG CCTGAACTCGACCCCGCCGTGGTGCCTGCGGAATACGCGAATGTCATGCGTACCGGTATTCCGTGGCATTCCGAACAGCT GGATTACGCCGACGATGTCATTTCCGGAGCTTTTGAGGTGCATGCTTTCCGTGCCGGAAGCGAAGTGCTGTGCGTGATGT TTCAGGATATTACGCAGCGCAAGCGCACAGAGGCGGAACTGGCCACGGTGACGTCTCTGCTGCAGGAACTCATTGATGTT ATGCCGTCGGTGCTTGTGGCTGTGGACACCGCAGGCAGGGTGACCCGATGGAATCATGCCGCGGAATCGCTGACGGGCAT CAGCGCTGCGCAGGCGGCGGGCAGGGAACTGGACGGCTTGTTTGCCTGGCCTGCCTTTGTGCGCAATCTGCTGGGCAGCG TGCAGGACGGGCCGGAGTGTGCGCATCTGGAAGATGCAGCCTGGGAGCATGACGGCGTTGTCCGCCACTGGGACGTGACC ATGTATCCGTTGAAGGAAGGCGGAGGCGGCGGATATGCGCTGCGTCTGGACGATGTGACATCGCGGGTACGGCTGCGGGA AATGATGATCCAGTCTGAAAAGATGCTGTCCGTTGCCGGTCTGGCGGCGGGTATGGCGCATGAAATCAACAATCCGCTGG GAGCCATTGCGCAGGCGGCACAGAACTGCCTGCGGCGTATGGGTACCGGTCTGCCGGCCAATCTGCATACCGCCGGTGAA CTGGGGCTGGATTTGTACGCCATGCAGACATATCTGGACCGGCGGGGCATATACGCCTTTATGGAAGATATCCGGCACAG TTGTTCGCGGGCGGCGCGGATAGTCAGCAATATGCTGGCTTTTTCCCGCACGGAAAAATCTCCGCGCAGCTGCGCCGATA TCCACGATGTAATCCGGCAGGCCGTGGTGCTGGCAGAAACGGATTACGACATGAAGCGTAAATATGACATAAAACGGGTG CGCGTGCGGTATGATTTTGCGGAGAATGTGCCGCAGGTGTGGTGCAGCGTGCAGGACCTGCAGCAGGTTTTTCTGAACCT TGTGCGCAACAGCAGTCAGGCCCTGAGTGAACAGGCCGGACATGCGGCACCCGAACTGCTGCTGCGTACCAGCCTGCAGC CTGAAGGGCGGGTGGAGATACGCGTGTGCGATAACGGTCCGGGAATGAGCGAAGAGGCGGCGCGGCGTTGCTTTGAGCCT TTTTACACCACAAAACCGGTGGGCGAAGGCACGGGGCTGGGGCTGTATGTAAGCTATCTCATCATCAAACAGCATCAGGG CACGATACATCTGAACAGCGGCCCGCAGCGCGGCGCGGAATTCGTCATCAGTCTGCCCGCATTGTGCTGA
Upstream 100 bases:
>100_bases GCAGAGTATACCTTGTATACAGGTAGGGTATCGCGCCGCGGCATGCTATGGTGGCTCAGTATGTTTGCCCCGCTTTGTGT GACGGGGGTGCGGAGTCTGC
Downstream 100 bases:
>100_bases ACGGCGCATCGGCTCTTGCCTGTGCGGCAGGGGCAGTGTCGTAGTTGCCCTGCGGCCGGTTGCAAAATTATGCGAAAGTT TGCCGGAGGGCAAAAAACAG
Product: PAS/PAC sensor signal transduction histidine kinase
Products: NA
Alternate protein names: Stage II sporulation protein F; Stage II sporulation protein J [H]
Number of amino acids: Translated: 769; Mature: 769
Protein sequence:
>769_residues MMNSVSEGMKEYTGCPVADELLLAGLDDPLLIVAADSGHMLWTNQQGAVWCGLYAAETAAVQGIPPALASGWQHLTGLTV CGRLCCADALAVQWRGRRAVLLRGRTDTGKKEPPAENAQAGVGAPCAPRREDERYRIVYDTMAQGVVFQDRTGSIVCANA AAERLLGLGSDAMRGMDSHSGSWQAVDVDGSPLPGSAHPSMVALRTGRPVSGRVMGIRHQTTGAQRWLVVSATPLFTGGG SVPAEVFSTFEDITELAAARRELALYSERLQQVIDRSPLGVFLWQYQDGRFTFLHGNPASEAMLGITVAEYAGQELLEML PELDPAVVPAEYANVMRTGIPWHSEQLDYADDVISGAFEVHAFRAGSEVLCVMFQDITQRKRTEAELATVTSLLQELIDV MPSVLVAVDTAGRVTRWNHAAESLTGISAAQAAGRELDGLFAWPAFVRNLLGSVQDGPECAHLEDAAWEHDGVVRHWDVT MYPLKEGGGGGYALRLDDVTSRVRLREMMIQSEKMLSVAGLAAGMAHEINNPLGAIAQAAQNCLRRMGTGLPANLHTAGE LGLDLYAMQTYLDRRGIYAFMEDIRHSCSRAARIVSNMLAFSRTEKSPRSCADIHDVIRQAVVLAETDYDMKRKYDIKRV RVRYDFAENVPQVWCSVQDLQQVFLNLVRNSSQALSEQAGHAAPELLLRTSLQPEGRVEIRVCDNGPGMSEEAARRCFEP FYTTKPVGEGTGLGLYVSYLIIKQHQGTIHLNSGPQRGAEFVISLPALC
Sequences:
>Translated_769_residues MMNSVSEGMKEYTGCPVADELLLAGLDDPLLIVAADSGHMLWTNQQGAVWCGLYAAETAAVQGIPPALASGWQHLTGLTV CGRLCCADALAVQWRGRRAVLLRGRTDTGKKEPPAENAQAGVGAPCAPRREDERYRIVYDTMAQGVVFQDRTGSIVCANA AAERLLGLGSDAMRGMDSHSGSWQAVDVDGSPLPGSAHPSMVALRTGRPVSGRVMGIRHQTTGAQRWLVVSATPLFTGGG SVPAEVFSTFEDITELAAARRELALYSERLQQVIDRSPLGVFLWQYQDGRFTFLHGNPASEAMLGITVAEYAGQELLEML PELDPAVVPAEYANVMRTGIPWHSEQLDYADDVISGAFEVHAFRAGSEVLCVMFQDITQRKRTEAELATVTSLLQELIDV MPSVLVAVDTAGRVTRWNHAAESLTGISAAQAAGRELDGLFAWPAFVRNLLGSVQDGPECAHLEDAAWEHDGVVRHWDVT MYPLKEGGGGGYALRLDDVTSRVRLREMMIQSEKMLSVAGLAAGMAHEINNPLGAIAQAAQNCLRRMGTGLPANLHTAGE LGLDLYAMQTYLDRRGIYAFMEDIRHSCSRAARIVSNMLAFSRTEKSPRSCADIHDVIRQAVVLAETDYDMKRKYDIKRV RVRYDFAENVPQVWCSVQDLQQVFLNLVRNSSQALSEQAGHAAPELLLRTSLQPEGRVEIRVCDNGPGMSEEAARRCFEP FYTTKPVGEGTGLGLYVSYLIIKQHQGTIHLNSGPQRGAEFVISLPALC >Mature_769_residues MMNSVSEGMKEYTGCPVADELLLAGLDDPLLIVAADSGHMLWTNQQGAVWCGLYAAETAAVQGIPPALASGWQHLTGLTV CGRLCCADALAVQWRGRRAVLLRGRTDTGKKEPPAENAQAGVGAPCAPRREDERYRIVYDTMAQGVVFQDRTGSIVCANA AAERLLGLGSDAMRGMDSHSGSWQAVDVDGSPLPGSAHPSMVALRTGRPVSGRVMGIRHQTTGAQRWLVVSATPLFTGGG SVPAEVFSTFEDITELAAARRELALYSERLQQVIDRSPLGVFLWQYQDGRFTFLHGNPASEAMLGITVAEYAGQELLEML PELDPAVVPAEYANVMRTGIPWHSEQLDYADDVISGAFEVHAFRAGSEVLCVMFQDITQRKRTEAELATVTSLLQELIDV MPSVLVAVDTAGRVTRWNHAAESLTGISAAQAAGRELDGLFAWPAFVRNLLGSVQDGPECAHLEDAAWEHDGVVRHWDVT MYPLKEGGGGGYALRLDDVTSRVRLREMMIQSEKMLSVAGLAAGMAHEINNPLGAIAQAAQNCLRRMGTGLPANLHTAGE LGLDLYAMQTYLDRRGIYAFMEDIRHSCSRAARIVSNMLAFSRTEKSPRSCADIHDVIRQAVVLAETDYDMKRKYDIKRV RVRYDFAENVPQVWCSVQDLQQVFLNLVRNSSQALSEQAGHAAPELLLRTSLQPEGRVEIRVCDNGPGMSEEAARRCFEP FYTTKPVGEGTGLGLYVSYLIIKQHQGTIHLNSGPQRGAEFVISLPALC
Specific function: Phosphorylates the sporulation-regulatory proteins spo0A and spo0F. It also autophosphorylates in the presence of ATP [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 3 PAS (PER-ARNT-SIM) domains [H]
Homologues:
Organism=Escherichia coli, GI1788549, Length=368, Percent_Identity=28.2608695652174, Blast_Score=117, Evalue=2e-27, Organism=Escherichia coli, GI1790436, Length=266, Percent_Identity=27.8195488721804, Blast_Score=102, Evalue=6e-23, Organism=Escherichia coli, GI1790300, Length=380, Percent_Identity=23.6842105263158, Blast_Score=80, Evalue=4e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR001610 - InterPro: IPR000014 - InterPro: IPR013767 - InterPro: IPR013655 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS; PF08447 PAS_3 [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 83724; Mature: 83724
Theoretical pI: Translated: 5.42; Mature: 5.42
Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMNSVSEGMKEYTGCPVADELLLAGLDDPLLIVAADSGHMLWTNQQGAVWCGLYAAETAA CCCCHHHHHHHHCCCCCHHHHHHHCCCCCEEEEEECCCCEEEECCCCCEEEEEHHHHHHH VQGIPPALASGWQHLTGLTVCGRLCCADALAVQWRGRRAVLLRGRTDTGKKEPPAENAQA HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCEEEEEECCCCCCCCCCCCCCCCC GVGAPCAPRREDERYRIVYDTMAQGVVFQDRTGSIVCANAAAERLLGLGSDAMRGMDSHS CCCCCCCCCCCCCCEEEEEEHHHCCEEEECCCCCEEECCHHHHHHHCCCCHHHHCCCCCC GSWQAVDVDGSPLPGSAHPSMVALRTGRPVSGRVMGIRHQTTGAQRWLVVSATPLFTGGG CCEEEEECCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCCEEEEEEECEEECCCC SVPAEVFSTFEDITELAAARRELALYSERLQQVIDRSPLGVFLWQYQDGRFTFLHGNPAS CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCC EAMLGITVAEYAGQELLEMLPELDPAVVPAEYANVMRTGIPWHSEQLDYADDVISGAFEV HHHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHCHHHE HAFRAGSEVLCVMFQDITQRKRTEAELATVTSLLQELIDVMPSVLVAVDTAGRVTRWNHA EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCHH AESLTGISAAQAAGRELDGLFAWPAFVRNLLGSVQDGPECAHLEDAAWEHDGVVRHWDVT HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECEE MYPLKEGGGGGYALRLDDVTSRVRLREMMIQSEKMLSVAGLAAGMAHEINNPLGAIAQAA EEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH QNCLRRMGTGLPANLHTAGELGLDLYAMQTYLDRRGIYAFMEDIRHSCSRAARIVSNMLA HHHHHHHCCCCCCCCCCCHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH FSRTEKSPRSCADIHDVIRQAVVLAETDYDMKRKYDIKRVRVRYDFAENVPQVWCSVQDL HHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHCCCEEEEEEECHHHCHHHHHHHHHHH QQVFLNLVRNSSQALSEQAGHAAPELLLRTSLQPEGRVEIRVCDNGPGMSEEAARRCFEP HHHHHHHHHCHHHHHHHHCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHCC FYTTKPVGEGTGLGLYVSYLIIKQHQGTIHLNSGPQRGAEFVISLPALC CCCCCCCCCCCCHHHHHHHHHEEECCCEEEECCCCCCCCCEEEECCCCC >Mature Secondary Structure MMNSVSEGMKEYTGCPVADELLLAGLDDPLLIVAADSGHMLWTNQQGAVWCGLYAAETAA CCCCHHHHHHHHCCCCCHHHHHHHCCCCCEEEEEECCCCEEEECCCCCEEEEEHHHHHHH VQGIPPALASGWQHLTGLTVCGRLCCADALAVQWRGRRAVLLRGRTDTGKKEPPAENAQA HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCEEEEEECCCCCCCCCCCCCCCCC GVGAPCAPRREDERYRIVYDTMAQGVVFQDRTGSIVCANAAAERLLGLGSDAMRGMDSHS CCCCCCCCCCCCCCEEEEEEHHHCCEEEECCCCCEEECCHHHHHHHCCCCHHHHCCCCCC GSWQAVDVDGSPLPGSAHPSMVALRTGRPVSGRVMGIRHQTTGAQRWLVVSATPLFTGGG CCEEEEECCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCCEEEEEEECEEECCCC SVPAEVFSTFEDITELAAARRELALYSERLQQVIDRSPLGVFLWQYQDGRFTFLHGNPAS CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCC EAMLGITVAEYAGQELLEMLPELDPAVVPAEYANVMRTGIPWHSEQLDYADDVISGAFEV HHHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHCHHHE HAFRAGSEVLCVMFQDITQRKRTEAELATVTSLLQELIDVMPSVLVAVDTAGRVTRWNHA EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCHH AESLTGISAAQAAGRELDGLFAWPAFVRNLLGSVQDGPECAHLEDAAWEHDGVVRHWDVT HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECEE MYPLKEGGGGGYALRLDDVTSRVRLREMMIQSEKMLSVAGLAAGMAHEINNPLGAIAQAA EEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH QNCLRRMGTGLPANLHTAGELGLDLYAMQTYLDRRGIYAFMEDIRHSCSRAARIVSNMLA HHHHHHHCCCCCCCCCCCHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH FSRTEKSPRSCADIHDVIRQAVVLAETDYDMKRKYDIKRVRVRYDFAENVPQVWCSVQDL HHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHCCCEEEEEEECHHHCHHHHHHHHHHH QQVFLNLVRNSSQALSEQAGHAAPELLLRTSLQPEGRVEIRVCDNGPGMSEEAARRCFEP HHHHHHHHHCHHHHHHHHCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHCC FYTTKPVGEGTGLGLYVSYLIIKQHQGTIHLNSGPQRGAEFVISLPALC CCCCCCCCCCCCHHHHHHHHHEEECCCEEEECCCCCCCCCEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2104615; 2509430; 9384377 [H]