| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome. |
|---|---|
| Accession | NC_007519 |
| Length | 3,730,232 |
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The map label for this gene is pflD [H]
Identifier: 78358079
GI number: 78358079
Start: 3028046
End: 3030472
Strand: Reverse
Name: pflD [H]
Synonym: Dde_3039
Alternate gene names: 78358079
Gene position: 3030472-3028046 (Counterclockwise)
Preceding gene: 78358085
Following gene: 78358078
Centisome position: 81.24
GC content: 58.55
Gene sequence:
>2427_bases ATGAATGCAGTGACACACTCGTATCATGACGACACCGGACGGCGGCAGGCTGCCGGGCTGCCTCTTTCAGCACGGCTGCG ACGGTTGAAAGCCGCTTATCTTGAAGCGAAGCCGAGCATCACCATAGGCCGCGCCATGGCCTACACCGAAATTGAAAAGG CGTATCCCGACCTGCCGCCGGTGCTGCGCCGCGCCATGGGATTCCGGCGTGCCTGCGAAACCGCCCCCGTGCTTATTCAG GACGACGAACTGATTGTGGGGCACCCCTGCGGAGCGCCGCGCGCGGGTGCTTTTTCACCGGATACGGCGTGGAAGTGGCT GCGGGACGAACTGGATACCATAGGCACACGCCCGCAGGACCCGTACATGATAAGCGAAGCCGACAAGAAAATCATGCGTG AGGAGCTGTTTCCTTTCTGGGAGGGGCGCTCGCTTGATGAAGTCTGCGAGGACGCCTTCCGCCGGGAAGGTCTGTGGGAG TTTTGCGCCGAGGCCGGAATCAGCGACCTCAGCTACCATCATACCAGCGGCGGCGGTGATACCAGCCCCGGATACGATAT TATCCTTTTCACCAAAGGTATTAACGGACTGAAGGCCGAGGCCGAGGCGCATCTTGAAAGACTGGATGCGGAAAATGCCG GAGACAGCAGCGGGGCTGATTTCTACCGGGCGGCGGTTATCATCTGTGAAGGCGTTTTGCTGTATGCGGGCCGGGTGGCG GCGCATGCGCGTCAGCTGGCCGCTGCGGAACAAAATCCCGCCCGCAGGGAGGAACTGCTTGCCATTGCCGAGGTTAACAC CAGAGTGCCGGCCAACCCGCCCGCAACCTTTCATGAAGCCCTGCAGGCAGTCTGGACAATCCAGTCGCTGTTTCTGCTGG AAGAAAACCAGTGCAGCACTTCACTGGGACGGTTCGACCAGTATGTATACCCCTGCTACGAGGCCGGCATCCGTAACGGG ACACTGACCAGAGAGCAGGCTTTTGAACTGACAGGGTGCTTCATCATAAAATGCTCTGAGATGATCTGGTATACTCCCGG AGCCACCGCCAGATATTTTGCAGGATACATGCCTTTTATCAACATGTGTGTGGGCGGGCAGAAGCGTGAAGGCGGTGATG CCACCAACGATCTGACACTGCTGCTCATGGATGCGGTGCGCAGCGTCGGGGTGTACCAGCCCTCGCTTGCCTGCCGCATT CACAACCAGTCACCGCAGGAATACCTTGAAAAAATAGCGGATGTCGTGCGGGCGGGTACGGGTATGCCCGCATGCCATTT TGACGATGCCCATATCAGGATGATGCTCCGCAAGGGGTTCGACTTTGACGATGCGCGCGATTATTGCCTGATGGGCTGTG TGGAACCCCAGAAGTCGGGGCGCATACATCAGTGGACAGCGGGCGGTTTTACCCAGTGGCCGGTGGCAGTCGAACTGGTG TTCAACAGAGGCGTGCTGCGTTCGTACGGCAGACGCGTTGCGCCGGATACCGGCGACCCTGCAGGGTTTACCAGCTATGC CCAGTTTGAGGCTGCCGTGAAAACACAGCTTGACTACATAATGGAAATGACGGCGCGCGGAACGGTTATCAACCAGAAAC TGGTGCGTGACCTGATGCCCACGCCGTACATGTCGCTGTTTGTGGACGGATGCATGCAGACGGGCAAAGATGTCACCGCC GGCGGCGCGGTGCTGTATGAAGGACCGGGAACCATATTTGCCGGTCTGGGAACCTACGCGGACAGCATGGCCGCAGTGCG CAGGCTTGTCTTTGACGAGGCCAGATACACCATGGCTGAAATGAAGCAGGCTCTGGCTGCTGACTGGGCCGGCTTTGAAC AGATGCGCCGGGACTGCCGTAACGCGCCCAAATACGGCAACGATGATGAGTACGCCGACGGCATAGCCCGCGACATCATT GATTACACGGAAAAGACGATCAACGGGTTCAAGACACTGTACGCCCGTCTGATTCACGGCACCTTGTCGCAGTCGTTCAA TACGCCGCTGGGCGAAATGGTGGGAGCAACCCCTGACGGACGCGCAGCCGGTGCACCGCTTTCCGACGGCATGAGTCCTT CGCAGGGGGCGGACCGCAAGGGGCCCACGGCCATCATAAAGTCCGTGGGCAGGCTGAATGTGGAGTCCATGAGTCTGGGC ATGGCACATAATTTTAAACTGGTGCACGGATGTCTGGAAACACAGGAAGGACGCGCGGGACTTGTTTCTCTGCTGAAAAC GGCCTCAGTGCTGGGCAACGGACAGATGCAGTTCAACTATGTTGATGACAGCATGCTGCGCGATGCTCAGCGCCATCCGG AACAATACCGTGATCTTATGGTGCGTGTTGCCGGCTACAGCGCTTTTTTTGTGGAGCTGTGCAAAGAGGTGCAGGACGAG ATAATCAGCCGGACGGCGCTTCACTGA
Upstream 100 bases:
>100_bases GCCTGTCCGGTTTATGTCAGGGGTGTTTGCGTGACGGTGCAGGCGGCATGCCGGCCGCTGTTTTTTCTGCCTTGAACACA CCAGCAAAAGGAAGACAGGA
Downstream 100 bases:
>100_bases CGTGGCAGGCCGCATTGACCGGAAATCATTGATTTGTATGTATGTGAGGGCCGCCGCGCGACGGGCGGCCCTTTCCTTGT TTTTGTGCAGGCGCAGAGTA
Product: formate C-acetyltransferase
Products: NA
Alternate protein names: Pyruvate formate-lyase 2 [H]
Number of amino acids: Translated: 808; Mature: 808
Protein sequence:
>808_residues MNAVTHSYHDDTGRRQAAGLPLSARLRRLKAAYLEAKPSITIGRAMAYTEIEKAYPDLPPVLRRAMGFRRACETAPVLIQ DDELIVGHPCGAPRAGAFSPDTAWKWLRDELDTIGTRPQDPYMISEADKKIMREELFPFWEGRSLDEVCEDAFRREGLWE FCAEAGISDLSYHHTSGGGDTSPGYDIILFTKGINGLKAEAEAHLERLDAENAGDSSGADFYRAAVIICEGVLLYAGRVA AHARQLAAAEQNPARREELLAIAEVNTRVPANPPATFHEALQAVWTIQSLFLLEENQCSTSLGRFDQYVYPCYEAGIRNG TLTREQAFELTGCFIIKCSEMIWYTPGATARYFAGYMPFINMCVGGQKREGGDATNDLTLLLMDAVRSVGVYQPSLACRI HNQSPQEYLEKIADVVRAGTGMPACHFDDAHIRMMLRKGFDFDDARDYCLMGCVEPQKSGRIHQWTAGGFTQWPVAVELV FNRGVLRSYGRRVAPDTGDPAGFTSYAQFEAAVKTQLDYIMEMTARGTVINQKLVRDLMPTPYMSLFVDGCMQTGKDVTA GGAVLYEGPGTIFAGLGTYADSMAAVRRLVFDEARYTMAEMKQALAADWAGFEQMRRDCRNAPKYGNDDEYADGIARDII DYTEKTINGFKTLYARLIHGTLSQSFNTPLGEMVGATPDGRAAGAPLSDGMSPSQGADRKGPTAIIKSVGRLNVESMSLG MAHNFKLVHGCLETQEGRAGLVSLLKTASVLGNGQMQFNYVDDSMLRDAQRHPEQYRDLMVRVAGYSAFFVELCKEVQDE IISRTALH
Sequences:
>Translated_808_residues MNAVTHSYHDDTGRRQAAGLPLSARLRRLKAAYLEAKPSITIGRAMAYTEIEKAYPDLPPVLRRAMGFRRACETAPVLIQ DDELIVGHPCGAPRAGAFSPDTAWKWLRDELDTIGTRPQDPYMISEADKKIMREELFPFWEGRSLDEVCEDAFRREGLWE FCAEAGISDLSYHHTSGGGDTSPGYDIILFTKGINGLKAEAEAHLERLDAENAGDSSGADFYRAAVIICEGVLLYAGRVA AHARQLAAAEQNPARREELLAIAEVNTRVPANPPATFHEALQAVWTIQSLFLLEENQCSTSLGRFDQYVYPCYEAGIRNG TLTREQAFELTGCFIIKCSEMIWYTPGATARYFAGYMPFINMCVGGQKREGGDATNDLTLLLMDAVRSVGVYQPSLACRI HNQSPQEYLEKIADVVRAGTGMPACHFDDAHIRMMLRKGFDFDDARDYCLMGCVEPQKSGRIHQWTAGGFTQWPVAVELV FNRGVLRSYGRRVAPDTGDPAGFTSYAQFEAAVKTQLDYIMEMTARGTVINQKLVRDLMPTPYMSLFVDGCMQTGKDVTA GGAVLYEGPGTIFAGLGTYADSMAAVRRLVFDEARYTMAEMKQALAADWAGFEQMRRDCRNAPKYGNDDEYADGIARDII DYTEKTINGFKTLYARLIHGTLSQSFNTPLGEMVGATPDGRAAGAPLSDGMSPSQGADRKGPTAIIKSVGRLNVESMSLG MAHNFKLVHGCLETQEGRAGLVSLLKTASVLGNGQMQFNYVDDSMLRDAQRHPEQYRDLMVRVAGYSAFFVELCKEVQDE IISRTALH >Mature_808_residues MNAVTHSYHDDTGRRQAAGLPLSARLRRLKAAYLEAKPSITIGRAMAYTEIEKAYPDLPPVLRRAMGFRRACETAPVLIQ DDELIVGHPCGAPRAGAFSPDTAWKWLRDELDTIGTRPQDPYMISEADKKIMREELFPFWEGRSLDEVCEDAFRREGLWE FCAEAGISDLSYHHTSGGGDTSPGYDIILFTKGINGLKAEAEAHLERLDAENAGDSSGADFYRAAVIICEGVLLYAGRVA AHARQLAAAEQNPARREELLAIAEVNTRVPANPPATFHEALQAVWTIQSLFLLEENQCSTSLGRFDQYVYPCYEAGIRNG TLTREQAFELTGCFIIKCSEMIWYTPGATARYFAGYMPFINMCVGGQKREGGDATNDLTLLLMDAVRSVGVYQPSLACRI HNQSPQEYLEKIADVVRAGTGMPACHFDDAHIRMMLRKGFDFDDARDYCLMGCVEPQKSGRIHQWTAGGFTQWPVAVELV FNRGVLRSYGRRVAPDTGDPAGFTSYAQFEAAVKTQLDYIMEMTARGTVINQKLVRDLMPTPYMSLFVDGCMQTGKDVTA GGAVLYEGPGTIFAGLGTYADSMAAVRRLVFDEARYTMAEMKQALAADWAGFEQMRRDCRNAPKYGNDDEYADGIARDII DYTEKTINGFKTLYARLIHGTLSQSFNTPLGEMVGATPDGRAAGAPLSDGMSPSQGADRKGPTAIIKSVGRLNVESMSLG MAHNFKLVHGCLETQEGRAGLVSLLKTASVLGNGQMQFNYVDDSMLRDAQRHPEQYRDLMVRVAGYSAFFVELCKEVQDE IISRTALH
Specific function: Glucose metabolism (nonoxidative conversion). [C]
COG id: COG1882
COG function: function code C; Pyruvate-formate lyase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 pyruvate formate lyase domain [H]
Homologues:
Organism=Escherichia coli, GI1790388, Length=792, Percent_Identity=33.9646464646465, Blast_Score=420, Evalue=1e-118, Organism=Escherichia coli, GI1787044, Length=803, Percent_Identity=32.6276463262765, Blast_Score=395, Evalue=1e-111, Organism=Escherichia coli, GI48994926, Length=568, Percent_Identity=26.056338028169, Blast_Score=140, Evalue=3e-34, Organism=Escherichia coli, GI1787131, Length=551, Percent_Identity=23.7749546279492, Blast_Score=125, Evalue=1e-29,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001150 - InterPro: IPR019777 - InterPro: IPR004184 - InterPro: IPR010098 [H]
Pfam domain/function: PF01228 Gly_radical; PF02901 PFL [H]
EC number: =2.3.1.54 [H]
Molecular weight: Translated: 89207; Mature: 89207
Theoretical pI: Translated: 5.39; Mature: 5.39
Prosite motif: PS51149 GLY_RADICAL_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNAVTHSYHDDTGRRQAAGLPLSARLRRLKAAYLEAKPSITIGRAMAYTEIEKAYPDLPP CCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHCCCCCH VLRRAMGFRRACETAPVLIQDDELIVGHPCGAPRAGAFSPDTAWKWLRDELDTIGTRPQD HHHHHHHHHHHHCCCCEEEECCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC PYMISEADKKIMREELFPFWEGRSLDEVCEDAFRREGLWEFCAEAGISDLSYHHTSGGGD CCEECHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCC TSPGYDIILFTKGINGLKAEAEAHLERLDAENAGDSSGADFYRAAVIICEGVLLYAGRVA CCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH AHARQLAAAEQNPARREELLAIAEVNTRVPANPPATFHEALQAVWTIQSLFLLEENQCST HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHH SLGRFDQYVYPCYEAGIRNGTLTREQAFELTGCFIIKCSEMIWYTPGATARYFAGYMPFI HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCEEEEEECCEEEECCCCHHHHHHHHHHHH NMCVGGQKREGGDATNDLTLLLMDAVRSVGVYQPSLACRIHNQSPQEYLEKIADVVRAGT HHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCC GMPACHFDDAHIRMMLRKGFDFDDARDYCLMGCVEPQKSGRIHQWTAGGFTQWPVAVELV CCCCCCCCHHHHHHHHHHCCCCCCCCCHHEEECCCCCCCCCEEEEECCCCCCCCHHHHHH FNRGVLRSYGRRVAPDTGDPAGFTSYAQFEAAVKTQLDYIMEMTARGTVINQKLVRDLMP HHCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC TPYMSLFVDGCMQTGKDVTAGGAVLYEGPGTIFAGLGTYADSMAAVRRLVFDEARYTMAE CHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHH MKQALAADWAGFEQMRRDCRNAPKYGNDDEYADGIARDIIDYTEKTINGFKTLYARLIHG HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TLSQSFNTPLGEMVGATPDGRAAGAPLSDGMSPSQGADRKGPTAIIKSVGRLNVESMSLG HHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHC MAHNFKLVHGCLETQEGRAGLVSLLKTASVLGNGQMQFNYVDDSMLRDAQRHPEQYRDLM HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCHHHHHHHH VRVAGYSAFFVELCKEVQDEIISRTALH HHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MNAVTHSYHDDTGRRQAAGLPLSARLRRLKAAYLEAKPSITIGRAMAYTEIEKAYPDLPP CCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHCCCCCH VLRRAMGFRRACETAPVLIQDDELIVGHPCGAPRAGAFSPDTAWKWLRDELDTIGTRPQD HHHHHHHHHHHHCCCCEEEECCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC PYMISEADKKIMREELFPFWEGRSLDEVCEDAFRREGLWEFCAEAGISDLSYHHTSGGGD CCEECHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCC TSPGYDIILFTKGINGLKAEAEAHLERLDAENAGDSSGADFYRAAVIICEGVLLYAGRVA CCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH AHARQLAAAEQNPARREELLAIAEVNTRVPANPPATFHEALQAVWTIQSLFLLEENQCST HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHH SLGRFDQYVYPCYEAGIRNGTLTREQAFELTGCFIIKCSEMIWYTPGATARYFAGYMPFI HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCEEEEEECCEEEECCCCHHHHHHHHHHHH NMCVGGQKREGGDATNDLTLLLMDAVRSVGVYQPSLACRIHNQSPQEYLEKIADVVRAGT HHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCC GMPACHFDDAHIRMMLRKGFDFDDARDYCLMGCVEPQKSGRIHQWTAGGFTQWPVAVELV CCCCCCCCHHHHHHHHHHCCCCCCCCCHHEEECCCCCCCCCEEEEECCCCCCCCHHHHHH FNRGVLRSYGRRVAPDTGDPAGFTSYAQFEAAVKTQLDYIMEMTARGTVINQKLVRDLMP HHCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC TPYMSLFVDGCMQTGKDVTAGGAVLYEGPGTIFAGLGTYADSMAAVRRLVFDEARYTMAE CHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHH MKQALAADWAGFEQMRRDCRNAPKYGNDDEYADGIARDIIDYTEKTINGFKTLYARLIHG HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TLSQSFNTPLGEMVGATPDGRAAGAPLSDGMSPSQGADRKGPTAIIKSVGRLNVESMSLG HHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHC MAHNFKLVHGCLETQEGRAGLVSLLKTASVLGNGQMQFNYVDDSMLRDAQRHPEQYRDLM HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCHHHHHHHH VRVAGYSAFFVELCKEVQDEIISRTALH HHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8265357; 9278503; 7773398 [H]