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The map label for this gene is rpfG [H]

Identifier: 78358042

GI number: 78358042

Start: 2987260

End: 2988669

Strand: Direct

Name: rpfG [H]

Synonym: Dde_3002

Alternate gene names: 78358042

Gene position: 2987260-2988669 (Clockwise)

Preceding gene: 78358041

Following gene: 78358043

Centisome position: 80.08

GC content: 61.99

Gene sequence:

>1410_bases
ATGACACCTCGTTCCATCCTGCTGGTGGAAGACGAACCAGTCGTGGCCTTTGACGTGGCGCACCGGCTGCAGCTGCTGGG
TTATCCCGCGCCGTCCACGGTCCCTTCCGGAGAAGAAGCGCTGCGTGCCGCCGCTGCCCTGCGGCCCGATATCGTCCTTA
TGGACATCATGCTGGAAGGAGAGATGGACGGCATAGAAACGGCCGCGCTGCTGCATGACCGGTTCGACGTGCCTGTCATC
TACCTTACGGGCCTCATGGAACCGTCACTGCTGGAGCGCGCCAAAATAACCGGCCCGTTCGGGTATGTTGTCAAGCCGTT
TGACGACAGGGAACTGCACATCTGCATTGAGATGGCGCTGTACAAACACGCAGCGGAACGGGAACGCACCGAGCGCGAGC
AGCTTTTTGCCGCCACGCTGCGTTCCATACGCGAAGCGGTCATGATCATTGACAGGCAGGGGGTGATAACGTTCTGCAAC
CCCGCTGCGCAGGAGCTGCTGCACCTTTCGGCAGCACAGCTGGAACAGCGGATGTTTGCCTCCGTCGCCAGCCTGATGGT
GGAAGGAGACGCAACCGCCTCAGACCCCCGCCGGCTGGTGCTGCGCCATGCAGGTACAGGCCGCAGGTCGCTCAACGCAA
TACTGCAGCACGCATCGGGACACTGCCCTGTGGAAATTTCGGCCACGGTCACCGGCGACAGCCCGGACAGGGCGGGCACC
GTGCTGGTGCTGCGCGACATGACAACCCGCCGCCGCGACAAAGCATCGCTGACAAAGGCTCTGGACGAACTGCAGCGGGT
GTTTGAACAGACGGTCATGGCCCTTGCCGTGACCTCGGAAAAAAGAGACCCTTACACCGCAGGACACCAGCAGCGCGTGG
CACGTCTGGCCTGCGCCATTGCGGCCCGCACCGGCATGGATGTACACCGCTGTCAGGGCATACGCATGGCCGGCCTGCTG
CACGACATCGGCAAAATTTATGTTCCCTCGGAAATTCTGACAAAGCCCGCCACACTTTCCGCCATTGAACAGAACATCAT
GCGCACCCATCCGCGGGTGGGCTTCGACATCCTCAAGGGCGTTGATTTTCCGTGGCCGGTGGCACAGACAGTATTGCAGC
ACCACGAACGGCTGGACGGCAGCGGCTATCCGCTGGGGCTCTGCAAAGATGACATACTGCCCGAATCACGGGTTCTGGCC
GTGGCCGACGTGGTGGAGGCCATGTTCTCACACCGGCCGTACCGCCCGTCGCTGGGGCTGACACACGCGCTGGACGAAAT
ACGCACCGGAGCCGGTACCCTGTACTGTGCTGACGCCGTGCGTGCCTGCCTGGAACTTTTTGACGAGGGCTTTGCCTTTG
ACACTCCCGCGGAGCATCCCGCGGACAATGACGGAGACCTGACACCATGA

Upstream 100 bases:

>100_bases
TGCCCGCACGGCTTCTCGCCTCAGGGTTCACATTCCGGTTTCCCACGCTGGGGCAGGCGTTCGACGACCTGTTTCTGCCG
CGCAGCTGAACGGAGAACAC

Downstream 100 bases:

>100_bases
ACGCGCGCGTTCTTATTGTGGATGACGAAGACGGCATCCGCTTTTCCCTGCGGGGTATTCTGGAAGATGAAGGCTATGAG
GTAGCGGAGGCGGAAACCGG

Product: putative PAS/PAC sensor protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 469; Mature: 468

Protein sequence:

>469_residues
MTPRSILLVEDEPVVAFDVAHRLQLLGYPAPSTVPSGEEALRAAAALRPDIVLMDIMLEGEMDGIETAALLHDRFDVPVI
YLTGLMEPSLLERAKITGPFGYVVKPFDDRELHICIEMALYKHAAERERTEREQLFAATLRSIREAVMIIDRQGVITFCN
PAAQELLHLSAAQLEQRMFASVASLMVEGDATASDPRRLVLRHAGTGRRSLNAILQHASGHCPVEISATVTGDSPDRAGT
VLVLRDMTTRRRDKASLTKALDELQRVFEQTVMALAVTSEKRDPYTAGHQQRVARLACAIAARTGMDVHRCQGIRMAGLL
HDIGKIYVPSEILTKPATLSAIEQNIMRTHPRVGFDILKGVDFPWPVAQTVLQHHERLDGSGYPLGLCKDDILPESRVLA
VADVVEAMFSHRPYRPSLGLTHALDEIRTGAGTLYCADAVRACLELFDEGFAFDTPAEHPADNDGDLTP

Sequences:

>Translated_469_residues
MTPRSILLVEDEPVVAFDVAHRLQLLGYPAPSTVPSGEEALRAAAALRPDIVLMDIMLEGEMDGIETAALLHDRFDVPVI
YLTGLMEPSLLERAKITGPFGYVVKPFDDRELHICIEMALYKHAAERERTEREQLFAATLRSIREAVMIIDRQGVITFCN
PAAQELLHLSAAQLEQRMFASVASLMVEGDATASDPRRLVLRHAGTGRRSLNAILQHASGHCPVEISATVTGDSPDRAGT
VLVLRDMTTRRRDKASLTKALDELQRVFEQTVMALAVTSEKRDPYTAGHQQRVARLACAIAARTGMDVHRCQGIRMAGLL
HDIGKIYVPSEILTKPATLSAIEQNIMRTHPRVGFDILKGVDFPWPVAQTVLQHHERLDGSGYPLGLCKDDILPESRVLA
VADVVEAMFSHRPYRPSLGLTHALDEIRTGAGTLYCADAVRACLELFDEGFAFDTPAEHPADNDGDLTP
>Mature_468_residues
TPRSILLVEDEPVVAFDVAHRLQLLGYPAPSTVPSGEEALRAAAALRPDIVLMDIMLEGEMDGIETAALLHDRFDVPVIY
LTGLMEPSLLERAKITGPFGYVVKPFDDRELHICIEMALYKHAAERERTEREQLFAATLRSIREAVMIIDRQGVITFCNP
AAQELLHLSAAQLEQRMFASVASLMVEGDATASDPRRLVLRHAGTGRRSLNAILQHASGHCPVEISATVTGDSPDRAGTV
LVLRDMTTRRRDKASLTKALDELQRVFEQTVMALAVTSEKRDPYTAGHQQRVARLACAIAARTGMDVHRCQGIRMAGLLH
DIGKIYVPSEILTKPATLSAIEQNIMRTHPRVGFDILKGVDFPWPVAQTVLQHHERLDGSGYPLGLCKDDILPESRVLAV
ADVVEAMFSHRPYRPSLGLTHALDEIRTGAGTLYCADAVRACLELFDEGFAFDTPAEHPADNDGDLTP

Specific function: Positively regulates the synthesis of extracellular enzymes and extracellular polysaccharides. The cell-cell signaling system encoded by rpf genes is required for full virulence and is implicated in regulation of the formation and dispersal of biofilms [H

COG id: COG0784

COG function: function code T; FOG: CheY-like receiver

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR003607
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 51570; Mature: 51439

Theoretical pI: Translated: 5.70; Mature: 5.70

Prosite motif: PS50112 PAS ; PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPRSILLVEDEPVVAFDVAHRLQLLGYPAPSTVPSGEEALRAAAALRPDIVLMDIMLEG
CCCCEEEEECCCCEEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECC
EMDGIETAALLHDRFDVPVIYLTGLMEPSLLERAKITGPFGYVVKPFDDRELHICIEMAL
CCCCHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHCCCCCCCEECCCCCCCHHHHHHHHH
YKHAAERERTEREQLFAATLRSIREAVMIIDRQGVITFCNPAAQELLHLSAAQLEQRMFA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHHH
SVASLMVEGDATASDPRRLVLRHAGTGRRSLNAILQHASGHCPVEISATVTGDSPDRAGT
HHHHHHHCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCE
VLVLRDMTTRRRDKASLTKALDELQRVFEQTVMALAVTSEKRDPYTAGHQQRVARLACAI
EEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
AARTGMDVHRCQGIRMAGLLHDIGKIYVPSEILTKPATLSAIEQNIMRTHPRVGFDILKG
HHHCCCCHHHHCCCHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHC
VDFPWPVAQTVLQHHERLDGSGYPLGLCKDDILPESRVLAVADVVEAMFSHRPYRPSLGL
CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCH
THALDEIRTGAGTLYCADAVRACLELFDEGFAFDTPAEHPADNDGDLTP
HHHHHHHHCCCCCEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TPRSILLVEDEPVVAFDVAHRLQLLGYPAPSTVPSGEEALRAAAALRPDIVLMDIMLEG
CCCEEEEECCCCEEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECC
EMDGIETAALLHDRFDVPVIYLTGLMEPSLLERAKITGPFGYVVKPFDDRELHICIEMAL
CCCCHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHCCCCCCCEECCCCCCCHHHHHHHHH
YKHAAERERTEREQLFAATLRSIREAVMIIDRQGVITFCNPAAQELLHLSAAQLEQRMFA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHHH
SVASLMVEGDATASDPRRLVLRHAGTGRRSLNAILQHASGHCPVEISATVTGDSPDRAGT
HHHHHHHCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCE
VLVLRDMTTRRRDKASLTKALDELQRVFEQTVMALAVTSEKRDPYTAGHQQRVARLACAI
EEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
AARTGMDVHRCQGIRMAGLLHDIGKIYVPSEILTKPATLSAIEQNIMRTHPRVGFDILKG
HHHCCCCHHHHCCCHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHC
VDFPWPVAQTVLQHHERLDGSGYPLGLCKDDILPESRVLAVADVVEAMFSHRPYRPSLGL
CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCH
THALDEIRTGAGTLYCADAVRACLELFDEGFAFDTPAEHPADNDGDLTP
HHHHHHHHCCCCCEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11123673 [H]