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The map label for this gene is yddQ [C]

Identifier: 78356374

GI number: 78356374

Start: 1346795

End: 1347625

Strand: Reverse

Name: yddQ [C]

Synonym: Dde_1327

Alternate gene names: 78356374

Gene position: 1347625-1346795 (Counterclockwise)

Preceding gene: 78356375

Following gene: 78356373

Centisome position: 36.13

GC content: 60.65

Gene sequence:

>831_bases
ATGGCGGCACTGGCCACAGACAGACGAACCCGCACCATAATGACCATTGCCGCCTGCACCGCCCTGTTTGCCGCGGTGTT
TGCGGGTGCATGGCTGTACGGCGATTCGGGCGAGGTGACCCGCCTCACGCTGCGCAAACTGCCGCCGGACTTCAGTCATC
CCTTCGGCACGGACTGGCTGGGACGGGACATGTTTGCAAGGACACTCAAGGGACTGCGCATCAGTCTTTTCGTGGGGCTT
TCCGCCGCGGCCTGTTCCGCCGTTGTGGCGCTGGTGCTGGGGCTGGCAGCAGCCACCATGGGCAAAACGGTGGATGCCGT
TGTCACATGGCTGGTGGACGTAGCCATGGCCACACCGCATCTGGTGCTGCTCATCCTTATATCATTCGCCTGCGGAGGCG
GAGCAAAAGGTGTGATCATCGCCGTGGCGGCGTCGCACTGGCCGTCGCTGACACGTGTCATCCGCGCCGAGGTCATGCAG
CTGCAGTCCTCCGAATACGTCATGCTGTCGCACCAGCTGGGTAAAAGCCGCATGTTCATTGCCCGCAGACATATGCTGCC
GCATGTCATACCCCAGTTCATCATCGGCCTGCTGCTTCTGTTTCCGCATGCCATCCTGCATGCCGCTGCCCTGACATTTC
TGGGCTTCGGCATGTCGCCGCATACTCCGGCCATCGGCGTACTGCTGGCAGAATCCATGCGCTATCTTTCCATGGGATTA
TGGTGGCTTGCCGTGGCGCCCGGACTCACGCTGGTCATCACGGTAAAGACATTTGACATTCTGGGATCCAACATACGTGC
GCTGCTCGACCCGCGCACATGCAGAGAATAA

Upstream 100 bases:

>100_bases
AGCACGGTATTTGTCTTTACCGGCAACACGGTGGCCGACCTGCTGTATATGATCGTAGACCCGCGCATGCGGCGCAATGC
CCGCAAAGGAGACCGGTAAC

Downstream 100 bases:

>100_bases
ACAGGGAGCGGCCATGCTGGAAATACGCAATCTCTCCGTAGAATTCAGTACTTACTCCGCCGGACTCAGACGCCACAGTG
TGCCTGCCATACGCAGCCTT

Product: dipeptide ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 275

Protein sequence:

>276_residues
MAALATDRRTRTIMTIAACTALFAAVFAGAWLYGDSGEVTRLTLRKLPPDFSHPFGTDWLGRDMFARTLKGLRISLFVGL
SAAACSAVVALVLGLAAATMGKTVDAVVTWLVDVAMATPHLVLLILISFACGGGAKGVIIAVAASHWPSLTRVIRAEVMQ
LQSSEYVMLSHQLGKSRMFIARRHMLPHVIPQFIIGLLLLFPHAILHAAALTFLGFGMSPHTPAIGVLLAESMRYLSMGL
WWLAVAPGLTLVITVKTFDILGSNIRALLDPRTCRE

Sequences:

>Translated_276_residues
MAALATDRRTRTIMTIAACTALFAAVFAGAWLYGDSGEVTRLTLRKLPPDFSHPFGTDWLGRDMFARTLKGLRISLFVGL
SAAACSAVVALVLGLAAATMGKTVDAVVTWLVDVAMATPHLVLLILISFACGGGAKGVIIAVAASHWPSLTRVIRAEVMQ
LQSSEYVMLSHQLGKSRMFIARRHMLPHVIPQFIIGLLLLFPHAILHAAALTFLGFGMSPHTPAIGVLLAESMRYLSMGL
WWLAVAPGLTLVITVKTFDILGSNIRALLDPRTCRE
>Mature_275_residues
AALATDRRTRTIMTIAACTALFAAVFAGAWLYGDSGEVTRLTLRKLPPDFSHPFGTDWLGRDMFARTLKGLRISLFVGLS
AAACSAVVALVLGLAAATMGKTVDAVVTWLVDVAMATPHLVLLILISFACGGGAKGVIIAVAASHWPSLTRVIRAEVMQL
QSSEYVMLSHQLGKSRMFIARRHMLPHVIPQFIIGLLLLFPHAILHAAALTFLGFGMSPHTPAIGVLLAESMRYLSMGLW
WLAVAPGLTLVITVKTFDILGSNIRALLDPRTCRE

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787760, Length=242, Percent_Identity=31.404958677686, Blast_Score=130, Evalue=8e-32,
Organism=Escherichia coli, GI1787054, Length=224, Percent_Identity=33.9285714285714, Blast_Score=124, Evalue=9e-30,
Organism=Escherichia coli, GI1789889, Length=249, Percent_Identity=32.5301204819277, Blast_Score=120, Evalue=9e-29,
Organism=Escherichia coli, GI1789964, Length=256, Percent_Identity=31.640625, Blast_Score=101, Evalue=7e-23,
Organism=Escherichia coli, GI1788505, Length=225, Percent_Identity=30.2222222222222, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787498, Length=226, Percent_Identity=30.9734513274336, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1787549, Length=255, Percent_Identity=25.8823529411765, Blast_Score=75, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 29716; Mature: 29585

Theoretical pI: Translated: 10.45; Mature: 10.45

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAALATDRRTRTIMTIAACTALFAAVFAGAWLYGDSGEVTRLTLRKLPPDFSHPFGTDWL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEHHHHHCCCCCCCCCCCCHH
GRDMFARTLKGLRISLFVGLSAAACSAVVALVLGLAAATMGKTVDAVVTWLVDVAMATPH
HHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVLLILISFACGGGAKGVIIAVAASHWPSLTRVIRAEVMQLQSSEYVMLSHQLGKSRMFI
HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEHHCCCHHHHH
ARRHMLPHVIPQFIIGLLLLFPHAILHAAALTFLGFGMSPHTPAIGVLLAESMRYLSMGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
WWLAVAPGLTLVITVKTFDILGSNIRALLDPRTCRE
HHHHHCCCCEEEEEEEHHHHHCCCHHHHCCCHHCCC
>Mature Secondary Structure 
AALATDRRTRTIMTIAACTALFAAVFAGAWLYGDSGEVTRLTLRKLPPDFSHPFGTDWL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEHHHHHCCCCCCCCCCCCHH
GRDMFARTLKGLRISLFVGLSAAACSAVVALVLGLAAATMGKTVDAVVTWLVDVAMATPH
HHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVLLILISFACGGGAKGVIIAVAASHWPSLTRVIRAEVMQLQSSEYVMLSHQLGKSRMFI
HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEHHCCCHHHHH
ARRHMLPHVIPQFIIGLLLLFPHAILHAAALTFLGFGMSPHTPAIGVLLAESMRYLSMGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
WWLAVAPGLTLVITVKTFDILGSNIRALLDPRTCRE
HHHHHCCCCEEEEEEEHHHHHCCCHHHHCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA