| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome. |
|---|---|
| Accession | NC_007519 |
| Length | 3,730,232 |
Click here to switch to the map view.
The map label for this gene is oppD [C]
Identifier: 78356373
GI number: 78356373
Start: 1345858
End: 1346781
Strand: Reverse
Name: oppD [C]
Synonym: Dde_1326
Alternate gene names: 78356373
Gene position: 1346781-1345858 (Counterclockwise)
Preceding gene: 78356374
Following gene: 78356372
Centisome position: 36.1
GC content: 62.99
Gene sequence:
>924_bases ATGCTGGAAATACGCAATCTCTCCGTAGAATTCAGTACTTACTCCGCCGGACTCAGACGCCACAGTGTGCCTGCCATACG CAGCCTTGATCTTACGGTACAGGCAGGCACCATCGCAGCCGTGGTGGGACAGTCGGGCGCCGGCAAAAGCCTGCTGGCCC ATGCGGTGCTGGGCATTCTGCCCGCCAACGCAACCTGCTCCGGCGACATGTTCTACAACGGCCGCAGGCTCACGCCCCGC AGCATCCGCTCACTACGCGGCAAGGAAATCGCACTCATCCCGCAGTCGGTCAGCTTTCTCAACCCGCTGCTCAAAGTCGG GGTTCAGGTAGCCAGAGCCGGCATCTGCGGAGGCATGTCCGCGGCAGAGGCACGCAGCTCCGCACAGCAGGCCCTGCAAC GTTACGGACTGCCGCGCCGGACCCTGGGCTGGTTTCCATTTCAGCTTTCCGGCGGTATGACACGGCGTGTGCTGACAGCC ACAGCCACCATAGGGTCGGCCAGCCTGCTCATTGCAGACGAACCCACAAACGGGCTTGATCCGCTTACCGCCCGTGAAAC ACTGGGCCACCTGCGCAGTCTGGCCGATACGGGCAAGGCTGTCATATTGATTACACACGACATCGAAGCCGCCCTGAGTG TGGCGGACAGCGTAACCGTCTTCTGCGGCGGTGTGACCGTAGAAGAGGCCCGGGCCTCGGACTTCGACGGCAACGGTTCA CTGCGTCACCCCTACTCCCGCACCCTGTGGGAATCGCTGCCCCGTAACGGATTCACTCAGGCGGTACCGCAACCGGAAAC AGCCCCGCAGAACGGCGGTTGCCCTTTCAGCGGGGCATGCCTGCGCAGCAACGGCAGCTGCCGCGAAACCCTGCCGGAAC TGACGCCGCTGTCCGGCGGTAAAGTGAGGTGCTGGAATGCTTGA
Upstream 100 bases:
>100_bases CTCACGCTGGTCATCACGGTAAAGACATTTGACATTCTGGGATCCAACATACGTGCGCTGCTCGACCCGCGCACATGCAG AGAATAAACAGGGAGCGGCC
Downstream 100 bases:
>100_bases AGGCCGCGGATTGGGCTTCCGCTACAACCGCCGCGAAAACTGGCTTTTCCGCGGGCTGGACATAACCGTCGCCGCTGGAG AAAGAGTGGGGCTGCCCGGA
Product: ATPase
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 307; Mature: 307
Protein sequence:
>307_residues MLEIRNLSVEFSTYSAGLRRHSVPAIRSLDLTVQAGTIAAVVGQSGAGKSLLAHAVLGILPANATCSGDMFYNGRRLTPR SIRSLRGKEIALIPQSVSFLNPLLKVGVQVARAGICGGMSAAEARSSAQQALQRYGLPRRTLGWFPFQLSGGMTRRVLTA TATIGSASLLIADEPTNGLDPLTARETLGHLRSLADTGKAVILITHDIEAALSVADSVTVFCGGVTVEEARASDFDGNGS LRHPYSRTLWESLPRNGFTQAVPQPETAPQNGGCPFSGACLRSNGSCRETLPELTPLSGGKVRCWNA
Sequences:
>Translated_307_residues MLEIRNLSVEFSTYSAGLRRHSVPAIRSLDLTVQAGTIAAVVGQSGAGKSLLAHAVLGILPANATCSGDMFYNGRRLTPR SIRSLRGKEIALIPQSVSFLNPLLKVGVQVARAGICGGMSAAEARSSAQQALQRYGLPRRTLGWFPFQLSGGMTRRVLTA TATIGSASLLIADEPTNGLDPLTARETLGHLRSLADTGKAVILITHDIEAALSVADSVTVFCGGVTVEEARASDFDGNGS LRHPYSRTLWESLPRNGFTQAVPQPETAPQNGGCPFSGACLRSNGSCRETLPELTPLSGGKVRCWNA >Mature_307_residues MLEIRNLSVEFSTYSAGLRRHSVPAIRSLDLTVQAGTIAAVVGQSGAGKSLLAHAVLGILPANATCSGDMFYNGRRLTPR SIRSLRGKEIALIPQSVSFLNPLLKVGVQVARAGICGGMSAAEARSSAQQALQRYGLPRRTLGWFPFQLSGGMTRRVLTA TATIGSASLLIADEPTNGLDPLTARETLGHLRSLADTGKAVILITHDIEAALSVADSVTVFCGGVTVEEARASDFDGNGS LRHPYSRTLWESLPRNGFTQAVPQPETAPQNGGCPFSGACLRSNGSCRETLPELTPLSGGKVRCWNA
Specific function: Probably part of a binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for energy coupling to the transport system [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI21536376, Length=203, Percent_Identity=29.5566502463054, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI105990541, Length=201, Percent_Identity=29.3532338308458, Blast_Score=78, Evalue=1e-14, Organism=Homo sapiens, GI150417984, Length=201, Percent_Identity=32.3383084577114, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI116734710, Length=201, Percent_Identity=27.8606965174129, Blast_Score=71, Evalue=1e-12, Organism=Escherichia coli, GI48994883, Length=321, Percent_Identity=32.7102803738318, Blast_Score=143, Evalue=1e-35, Organism=Escherichia coli, GI1787759, Length=325, Percent_Identity=31.3846153846154, Blast_Score=131, Evalue=7e-32, Organism=Escherichia coli, GI1789963, Length=320, Percent_Identity=31.25, Blast_Score=127, Evalue=8e-31, Organism=Escherichia coli, GI1788506, Length=278, Percent_Identity=33.4532374100719, Blast_Score=115, Evalue=5e-27, Organism=Escherichia coli, GI145693107, Length=284, Percent_Identity=31.3380281690141, Blast_Score=115, Evalue=5e-27, Organism=Escherichia coli, GI1787548, Length=286, Percent_Identity=30.4195804195804, Blast_Score=114, Evalue=1e-26, Organism=Escherichia coli, GI1789890, Length=253, Percent_Identity=32.0158102766798, Blast_Score=108, Evalue=6e-25, Organism=Escherichia coli, GI1789962, Length=298, Percent_Identity=28.1879194630872, Blast_Score=107, Evalue=7e-25, Organism=Escherichia coli, GI1787500, Length=315, Percent_Identity=27.6190476190476, Blast_Score=102, Evalue=4e-23, Organism=Escherichia coli, GI1787105, Length=214, Percent_Identity=32.7102803738318, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1787029, Length=257, Percent_Identity=28.0155642023346, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1787758, Length=322, Percent_Identity=27.0186335403727, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1786319, Length=231, Percent_Identity=33.3333333333333, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1786703, Length=228, Percent_Identity=32.4561403508772, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI1789032, Length=268, Percent_Identity=26.1194029850746, Blast_Score=85, Evalue=5e-18, Organism=Escherichia coli, GI87081834, Length=209, Percent_Identity=32.0574162679426, Blast_Score=85, Evalue=6e-18, Organism=Escherichia coli, GI1788225, Length=257, Percent_Identity=26.8482490272374, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1787089, Length=216, Percent_Identity=31.4814814814815, Blast_Score=81, Evalue=1e-16, Organism=Escherichia coli, GI1786563, Length=229, Percent_Identity=30.5676855895196, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1789672, Length=225, Percent_Identity=30.2222222222222, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI87081709, Length=253, Percent_Identity=27.2727272727273, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1788644, Length=121, Percent_Identity=35.5371900826446, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1786398, Length=237, Percent_Identity=29.1139240506329, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1787547, Length=238, Percent_Identity=26.890756302521, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1789873, Length=187, Percent_Identity=33.1550802139037, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1790544, Length=239, Percent_Identity=27.6150627615063, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI48995001, Length=213, Percent_Identity=28.6384976525822, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1788450, Length=224, Percent_Identity=26.7857142857143, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1786872, Length=207, Percent_Identity=31.8840579710145, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1789593, Length=202, Percent_Identity=27.2277227722772, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI48994997, Length=232, Percent_Identity=28.448275862069, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1790525, Length=210, Percent_Identity=25.2380952380952, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1787143, Length=257, Percent_Identity=27.6264591439689, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1789991, Length=232, Percent_Identity=27.5862068965517, Blast_Score=71, Evalue=7e-14, Organism=Escherichia coli, GI1788761, Length=254, Percent_Identity=26.7716535433071, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI87082267, Length=205, Percent_Identity=31.219512195122, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1789891, Length=234, Percent_Identity=28.2051282051282, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1787370, Length=217, Percent_Identity=28.110599078341, Blast_Score=64, Evalue=8e-12, Organism=Escherichia coli, GI1787112, Length=217, Percent_Identity=29.9539170506912, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1787792, Length=211, Percent_Identity=32.2274881516588, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1787712, Length=224, Percent_Identity=28.5714285714286, Blast_Score=63, Evalue=3e-11, Organism=Escherichia coli, GI1787164, Length=202, Percent_Identity=33.1683168316832, Blast_Score=62, Evalue=4e-11, Organism=Escherichia coli, GI1790190, Length=240, Percent_Identity=23.3333333333333, Blast_Score=62, Evalue=6e-11, Organism=Caenorhabditis elegans, GI115533608, Length=197, Percent_Identity=27.9187817258883, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17552010, Length=187, Percent_Identity=29.9465240641711, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24650853, Length=208, Percent_Identity=31.25, Blast_Score=82, Evalue=4e-16, Organism=Drosophila melanogaster, GI24650855, Length=208, Percent_Identity=31.25, Blast_Score=82, Evalue=4e-16, Organism=Drosophila melanogaster, GI281362751, Length=208, Percent_Identity=31.25, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI28574150, Length=202, Percent_Identity=28.7128712871287, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI116007328, Length=202, Percent_Identity=28.7128712871287, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI24666092, Length=224, Percent_Identity=28.125, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24581387, Length=229, Percent_Identity=30.1310043668122, Blast_Score=73, Evalue=3e-13, Organism=Drosophila melanogaster, GI28574744, Length=215, Percent_Identity=31.1627906976744, Blast_Score=73, Evalue=3e-13, Organism=Drosophila melanogaster, GI24581383, Length=229, Percent_Identity=30.1310043668122, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI24581385, Length=229, Percent_Identity=30.1310043668122, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI161076684, Length=232, Percent_Identity=26.7241379310345, Blast_Score=68, Evalue=8e-12, Organism=Drosophila melanogaster, GI24581617, Length=232, Percent_Identity=26.7241379310345, Blast_Score=68, Evalue=8e-12, Organism=Drosophila melanogaster, GI24581615, Length=232, Percent_Identity=26.7241379310345, Blast_Score=68, Evalue=8e-12, Organism=Drosophila melanogaster, GI161076682, Length=232, Percent_Identity=26.7241379310345, Blast_Score=68, Evalue=9e-12, Organism=Drosophila melanogaster, GI116007184, Length=210, Percent_Identity=29.0476190476191, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI221500365, Length=210, Percent_Identity=29.0476190476191, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI21357907, Length=229, Percent_Identity=25.764192139738, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI85725262, Length=182, Percent_Identity=29.6703296703297, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI24643674, Length=205, Percent_Identity=26.3414634146341, Blast_Score=65, Evalue=7e-11, Organism=Drosophila melanogaster, GI28574533, Length=232, Percent_Identity=28.8793103448276, Blast_Score=65, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 32368; Mature: 32368
Theoretical pI: Translated: 9.41; Mature: 9.41
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLEIRNLSVEFSTYSAGLRRHSVPAIRSLDLTVQAGTIAAVVGQSGAGKSLLAHAVLGIL CCEEEEEEEEEHHHHHHHHHCCCCCCEEEEEEEECCEEEEEECCCCCCHHHHHHHHHHHC PANATCSGDMFYNGRRLTPRSIRSLRGKEIALIPQSVSFLNPLLKVGVQVARAGICGGMS CCCCCCCCCEEECCCCCCHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCH AAEARSSAQQALQRYGLPRRTLGWFPFQLSGGMTRRVLTATATIGSASLLIADEPTNGLD HHHHHHHHHHHHHHCCCCCHHHCCCCEEECCCCEEEEEEEEEECCCEEEEEEECCCCCCC PLTARETLGHLRSLADTGKAVILITHDIEAALSVADSVTVFCGGVTVEEARASDFDGNGS CCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCEEEEECCEEEECCCCCCCCCCCC LRHPYSRTLWESLPRNGFTQAVPQPETAPQNGGCPFSGACLRSNGSCRETLPELTPLSGG CCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHCCCCCCC KVRCWNA EEEEECC >Mature Secondary Structure MLEIRNLSVEFSTYSAGLRRHSVPAIRSLDLTVQAGTIAAVVGQSGAGKSLLAHAVLGIL CCEEEEEEEEEHHHHHHHHHCCCCCCEEEEEEEECCEEEEEECCCCCCHHHHHHHHHHHC PANATCSGDMFYNGRRLTPRSIRSLRGKEIALIPQSVSFLNPLLKVGVQVARAGICGGMS CCCCCCCCCEEECCCCCCHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCH AAEARSSAQQALQRYGLPRRTLGWFPFQLSGGMTRRVLTATATIGSASLLIADEPTNGLD HHHHHHHHHHHHHHCCCCCHHHCCCCEEECCCCEEEEEEEEEECCCEEEEEEECCCCCCC PLTARETLGHLRSLADTGKAVILITHDIEAALSVADSVTVFCGGVTVEEARASDFDGNGS CCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCEEEEECCEEEECCCCCCCCCCCC LRHPYSRTLWESLPRNGFTQAVPQPETAPQNGGCPFSGACLRSNGSCRETLPELTPLSGG CCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHCCCCCCC KVRCWNA EEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8796346; 9163424 [H]