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The map label for this gene is kdgT1 [H]

Identifier: 78355176

GI number: 78355176

Start: 120907

End: 121878

Strand: Reverse

Name: kdgT1 [H]

Synonym: Dde_0129

Alternate gene names: 78355176

Gene position: 121878-120907 (Counterclockwise)

Preceding gene: 78355177

Following gene: 78355175

Centisome position: 3.27

GC content: 58.13

Gene sequence:

>972_bases
ATGAAACAGGTTCCCATCGTTGACTGGCTGCAGCGGCTGCCCGGCGGCATGATGCTGGTGCCCCTCATTCTGGGTTCGGT
CACAGGCACATTTTTTCCCGGATTTCTGGGGCTGGGGTCGTTTACCACCGCCTTGTTCAAAAACAGCGCACTGCCGCTCA
TCGGTCTGCTCATACTGGCCACGGGCGCCCAGATAAACGCCAGACAAAGCACGGGCGTTTTCAAGCGCTGCGGGGTCCTG
CTGCTTACCAAAACGTTCATTCCTGCCGTCATTATCATTCTGTACGGCAACATCTTCGGACGCGAAGGCATTCTGGGCGT
ATCGCTGCTGGCCGCCATGATAGCCTTCACCAACTCCAACGGCGGTCTGTGGCTGGCCCTTACCGGACAGTACGGCACAG
ATGAGGACCGCGGCGCCTACATTGCCAGCGGCCTTAACGACGGGCCTTTTTTCATTCTGCTGGCGCTGGGCCTTTCCGGA
CATGCCAACGTACCGTGGCAGGCCATCGTGGGAACGGTCATTCCCTTTATTGTCGGTTTTGTACTGGGTAATCTGGACAA
AAAGTTTGCCGAAATGATGAAGCCCACTGCAGCCATTACCATTCCGTTTTTCGCCTTTGCGCTGGGCACGGGCATAAACC
TGCAAAACCTTGTGACAGGCGGCGTCACAGGCGTGCTGCTGGGCATAGGTGTAACGCTGGTCACGGGTTTTCTGTGCTTT
GCCGGCTACAGGCTGTTCATCCGCAACTCCAATCCGGGCATAGGCTTTGCTGCGGGAACCACTGCGGGCAACTCCATCAC
CAGCGTTCTTGTGGTGGTGCAGGCCGACCCCTCGTATGCGCCTTTTCAGGCGGTGGCCACCGCACAGGTTGCAGCGGCGG
TGCTGGTAACAGCCATACTGTGCCCGCTGATGACGCACTATATGTGCAAGCGCTATGATGCTGCACATCCCCCGCAGGAG
CAGCGCGCATGA

Upstream 100 bases:

>100_bases
CGGATTCGCTTTGCCTGCCTTATGGCGGCGCACACAGCTGCGCCGCGGTCACGCCAACCCCGGCTGACAGACTGACAGCC
GGTAACCAAGGAGGAAGAGG

Downstream 100 bases:

>100_bases
CCAGATACGCAGTTATCGCCGACGACCTGACAGGCGCAGGTGACACCGGCGTGCAGTTTGCCAAAGCCGGACTGCGTACG
CGCATTCTGACGCACAACTG

Product: 2-keto-3-deoxygluconate permease

Products: Proton [Cytoplasm]; 2-dehydro-3-deoxy-D-gluconate [Cytoplasm] [C]

Alternate protein names: KDG permease 1 [H]

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MKQVPIVDWLQRLPGGMMLVPLILGSVTGTFFPGFLGLGSFTTALFKNSALPLIGLLILATGAQINARQSTGVFKRCGVL
LLTKTFIPAVIIILYGNIFGREGILGVSLLAAMIAFTNSNGGLWLALTGQYGTDEDRGAYIASGLNDGPFFILLALGLSG
HANVPWQAIVGTVIPFIVGFVLGNLDKKFAEMMKPTAAITIPFFAFALGTGINLQNLVTGGVTGVLLGIGVTLVTGFLCF
AGYRLFIRNSNPGIGFAAGTTAGNSITSVLVVVQADPSYAPFQAVATAQVAAAVLVTAILCPLMTHYMCKRYDAAHPPQE
QRA

Sequences:

>Translated_323_residues
MKQVPIVDWLQRLPGGMMLVPLILGSVTGTFFPGFLGLGSFTTALFKNSALPLIGLLILATGAQINARQSTGVFKRCGVL
LLTKTFIPAVIIILYGNIFGREGILGVSLLAAMIAFTNSNGGLWLALTGQYGTDEDRGAYIASGLNDGPFFILLALGLSG
HANVPWQAIVGTVIPFIVGFVLGNLDKKFAEMMKPTAAITIPFFAFALGTGINLQNLVTGGVTGVLLGIGVTLVTGFLCF
AGYRLFIRNSNPGIGFAAGTTAGNSITSVLVVVQADPSYAPFQAVATAQVAAAVLVTAILCPLMTHYMCKRYDAAHPPQE
QRA
>Mature_323_residues
MKQVPIVDWLQRLPGGMMLVPLILGSVTGTFFPGFLGLGSFTTALFKNSALPLIGLLILATGAQINARQSTGVFKRCGVL
LLTKTFIPAVIIILYGNIFGREGILGVSLLAAMIAFTNSNGGLWLALTGQYGTDEDRGAYIASGLNDGPFFILLALGLSG
HANVPWQAIVGTVIPFIVGFVLGNLDKKFAEMMKPTAAITIPFFAFALGTGINLQNLVTGGVTGVLLGIGVTLVTGFLCF
AGYRLFIRNSNPGIGFAAGTTAGNSITSVLVVVQADPSYAPFQAVATAQVAAAVLVTAILCPLMTHYMCKRYDAAHPPQE
QRA

Specific function: The 2-keto-3-deoxygluconate permease transports the degraded pectin products into the bacterial cell, where they serve as carbon and energy sources. This is a hydrogen coupled transport system [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the kdgT transporter family [H]

Homologues:

Organism=Escherichia coli, GI87082349, Length=311, Percent_Identity=34.7266881028939, Blast_Score=164, Evalue=5e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004684
- ProDom:   PD024513 [H]

Pfam domain/function: PF03812 KdgT [H]

EC number: NA

Molecular weight: Translated: 33828; Mature: 33828

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQVPIVDWLQRLPGGMMLVPLILGSVTGTFFPGFLGLGSFTTALFKNSALPLIGLLILA
CCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
TGAQINARQSTGVFKRCGVLLLTKTFIPAVIIILYGNIFGREGILGVSLLAAMIAFTNSN
CCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCC
GGLWLALTGQYGTDEDRGAYIASGLNDGPFFILLALGLSGHANVPWQAIVGTVIPFIVGF
CCEEEEEECCCCCCCCCCEEEECCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHH
VLGNLDKKFAEMMKPTAAITIPFFAFALGTGINLQNLVTGGVTGVLLGIGVTLVTGFLCF
HHHCHHHHHHHHHCCCCEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGYRLFIRNSNPGIGFAAGTTAGNSITSVLVVVQADPSYAPFQAVATAQVAAAVLVTAIL
HCCEEEEEECCCCCEEEECCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
CPLMTHYMCKRYDAAHPPQEQRA
HHHHHHHHHHHCCCCCCCHHCCC
>Mature Secondary Structure
MKQVPIVDWLQRLPGGMMLVPLILGSVTGTFFPGFLGLGSFTTALFKNSALPLIGLLILA
CCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
TGAQINARQSTGVFKRCGVLLLTKTFIPAVIIILYGNIFGREGILGVSLLAAMIAFTNSN
CCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCC
GGLWLALTGQYGTDEDRGAYIASGLNDGPFFILLALGLSGHANVPWQAIVGTVIPFIVGF
CCEEEEEECCCCCCCCCCEEEECCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHH
VLGNLDKKFAEMMKPTAAITIPFFAFALGTGINLQNLVTGGVTGVLLGIGVTLVTGFLCF
HHHCHHHHHHHHHCCCCEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGYRLFIRNSNPGIGFAAGTTAGNSITSVLVVVQADPSYAPFQAVATAQVAAAVLVTAIL
HCCEEEEEECCCCCEEEECCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
CPLMTHYMCKRYDAAHPPQEQRA
HHHHHHHHHHHCCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Proton [Periplasm]; 2-dehydro-3-deoxy-D-gluconate [Periplasm] [C]

Specific reaction: Proton [Periplasm] + 2-dehydro-3-deoxy-D-gluconate [Periplasm] = Proton [Cytoplasm] + 2-dehydro-3-deoxy-D-gluconate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]