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The map label for this gene is ntrC [H]

Identifier: 78224370

GI number: 78224370

Start: 3580316

End: 3580678

Strand: Reverse

Name: ntrC [H]

Synonym: Gmet_3179

Alternate gene names: 78224370

Gene position: 3580678-3580316 (Counterclockwise)

Preceding gene: 78224371

Following gene: 78224369

Centisome position: 89.57

GC content: 58.4

Gene sequence:

>363_bases
ATGGCACGACTGCTGGTGGTGGACGATGAAAGCAGCATCAGGCTGCTCTATTCCCAGGAACTGGCTGACGATGGGCACGA
AGTGGCCACCGCCGCCACTGCCGCCGAGGCGGTGGAGAAGATCAAGGAGAGTGAGTTCGACCTGATCGTCCTCGATATCA
AGCTCAAGAACGAGAGCGGCCTCGACCTCCTCCAGAAGGTTGTCAAGGAACGCCACAACCTGCCGGTGATCCTCTGCACC
GCCTTCTCCTGTTTCAAAGATGATTTTTCCGCCTGGCTCGCCGACGGCTACGTGGTGAAGTCCAGCGACCTCACGGAGCT
CAAGGAGGAGGTCAAGCGGGTTCTGGTGAAGAAAGGGAAGTGA

Upstream 100 bases:

>100_bases
ATTATGGAGAAGCACGGCAACCTCTTCGAGGTTGATACCCCGCCTGGCGGGGGAACCCGGTATATCATCAAACTACCCGT
GAACAGGGAGGAGACGTAAC

Downstream 100 bases:

>100_bases
GGTGGCGAGATGGCGAGGTCGCGAGGTAGTTTAATCAATACTATCTCGCGACCTCGCTCCCTCACTACCTCGCTCAATAC
ATAAAAAGGAGCATCCCATG

Product: response regulator receiver domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 120; Mature: 119

Protein sequence:

>120_residues
MARLLVVDDESSIRLLYSQELADDGHEVATAATAAEAVEKIKESEFDLIVLDIKLKNESGLDLLQKVVKERHNLPVILCT
AFSCFKDDFSAWLADGYVVKSSDLTELKEEVKRVLVKKGK

Sequences:

>Translated_120_residues
MARLLVVDDESSIRLLYSQELADDGHEVATAATAAEAVEKIKESEFDLIVLDIKLKNESGLDLLQKVVKERHNLPVILCT
AFSCFKDDFSAWLADGYVVKSSDLTELKEEVKRVLVKKGK
>Mature_119_residues
ARLLVVDDESSIRLLYSQELADDGHEVATAATAAEAVEKIKESEFDLIVLDIKLKNESGLDLLQKVVKERHNLPVILCTA
FSCFKDDFSAWLADGYVVKSSDLTELKEEVKRVLVKKGK

Specific function: Member of the two-component regulatory system ntrB/ntrC involved in the activation of nitrogen assimilatory genes such as glnA. NtrC is phosphorylated by ntrB and interacts with sigma-54 [H]

COG id: COG0784

COG function: function code T; FOG: CheY-like receiver

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR011006
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR002078
- InterPro:   IPR010114
- InterPro:   IPR001789 [H]

Pfam domain/function: PF02954 HTH_8; PF00072 Response_reg; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 13396; Mature: 13264

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARLLVVDDESSIRLLYSQELADDGHEVATAATAAEAVEKIKESEFDLIVLDIKLKNESG
CCEEEEEECCCCEEEEEEHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCC
LDLLQKVVKERHNLPVILCTAFSCFKDDFSAWLADGYVVKSSDLTELKEEVKRVLVKKGK
HHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ARLLVVDDESSIRLLYSQELADDGHEVATAATAAEAVEKIKESEFDLIVLDIKLKNESG
CEEEEEECCCCEEEEEEHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCC
LDLLQKVVKERHNLPVILCTAFSCFKDDFSAWLADGYVVKSSDLTELKEEVKRVLVKKGK
HHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3020561 [H]