| Definition | Geobacter metallireducens GS-15 chromosome, complete genome. |
|---|---|
| Accession | NC_007517 |
| Length | 3,997,420 |
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The map label for this gene is glmM [H]
Identifier: 78224369
GI number: 78224369
Start: 3577708
End: 3580218
Strand: Reverse
Name: glmM [H]
Synonym: Gmet_3178
Alternate gene names: 78224369
Gene position: 3580218-3577708 (Counterclockwise)
Preceding gene: 78224370
Following gene: 78224368
Centisome position: 89.56
GC content: 61.81
Gene sequence:
>2511_bases ATGAAAGCAGTCATTATGGCAGGCGGGTTCGGGACCCGCATCCAACCCCTCACGAGCAGCATCCCGAAACCGATGATCCC GCTGCTGAACCGCCCCATCATGCTCCATATCGTAGAATTGCTGAAGAAGTACGAGATCACCGATCTCGTAATGCTCCTTT ACCACCAGCCGGCGGTCATCAAGAACTTTTTCCGGGACGGCACCGACTTCGGCGTCAAGATCACCTACGTCACCCCCCTC CAGGACATGGGGACCGCCGGGGCCGTCAAGTGCGCCGAGAAGTTCCTGGACGAGCGGTTCCTCGTCATCAGCGGTGACCT CCTCACCGACTTCAACCTCCAGAAGATCATCGACTCCCACGAGGACAACAAGGCCCTGGCCACCATCACCCTCACCTCGG TGAAGGACCCGCTCCAGTTCGGGGTCGTCATCACCGACAAGGAAAAGCGGATCACCCAGTTCCTGGAAAAGCCGGGGTGG GGGGAGGTGATATCAGATACCATCAACACCGGCATCTACGTCTTCGAGCCGGAAATTTTCGCCCATATCCCGGAGGAGGA GAACTACGACTTCTCCCAGGACCTCTTCCCGAAACTCCTGGAGCAGCAGAAGCCCCTCTTCGGCTACACCGCAAAGGGGT ACTGGCGCGACATCGGCAACACCGACTCCTACCGTGAGGCCCATCACGACATCTTCAAGGGGAAGGTAAACGTAAAGATC GACGAGGCGAAGCAGGACCTGGTGGGGAAGGATCTGCGGCTTGGGAGCGACGTGAACCTGGACGAGCATGTCACCCTGGA GGGAACGGTGGTCGTGGGGGACAACTCCCAGGTCTTCGAGAGCGCCCACATCAAGGACACGGTTATCGGCCGCAACTGTA CCATCGAGCCGGGGGTCCGCCTCAACCGCTGCGTCATCTGGGACAACGTCTACGTGAAGAAGGGGGCGAAGCTCAACGAC GGCGTCCTCTGCAGCAATGTGCGGGTCGGGCACGGGGTCGTCATGGAGGAGGGGGTCATCGTGGCCGACGACACCTCCAT CGGCGAGGAGGCCTACATCAAGCGGGACGTGAAGATCTGGCCCCGGAAGGTGATCGAGGCCGGGGCCACCGTCACCGGCA ACCTCATCTGGGGTGAAAAGTGGAAAAAGTCCCTCTTCGAGGGGGCCATGGTCAAGGGGCTCACCAACATGGAGCTTACC CCCGAGTTCGTGGCCAAGCTGGGGTGCGCCTATGGTACCATGCTCCCCAAGGGGAGCCATATCATCTCGGGCCGCGATTC CTACCGCTCCTGCCGGATGCTGAAGCGAAGCTTTATCGGCGGGCTCCTCTCCGCCGGGATCAATGTACGGGACCTGACCA TGGTGCCGATGCCGGTCTTGCGCTATAAGCTCCGCACCTTTGGCGAGGTGGGTGGAATCTACTTCCGCCAGGCCATTGAC GACCCCGCTTCCACCGAGATTGTCTTCCTGGATGGCGACGGCCTCGACTTCTCCAGTTCCATGGGGAAGAACGTGGAGAG AATCTTTTTCAAGGAGAACTTCCGCCGGGCCCACCACACGGAGCCGGGGGCGTTGTCCGAGATTCCACAACAGGTGACGG ATTTTTATCGTGAGGGGTTCCTCCACACCATCGGCAAGTCGCCGCTGCAGAAGAAACAGTTCAAGGTGGTGATCGACTTC AACCACTCATCGGCCAGCCAGCTCCTTCCCGGCATCCTGACCCAGATGGGGTGCGAGGTCATCAGCCTCAACGCCTACGT GGACGAGGAGCGGGGGATCCAGGCAGTGGCTGAACGGCAGCAGAGTCTCGCCCAGCTTTCCAAGATCGTTGCCACCCTGG AGGCAAGCGCCGGGTTCTGGCTCGACCCCGGCACCGAAGGGGTCATCGTGGTGGACGAGACCGGCAAGGTCTACGAGGGG GCCGAACTTCTGCCGCTCATGGTGGGGCTTGCGCTCCGCTCGGGCGAGAAGGGGCTCTTCGCGGTGCCGGTGTCGGCCCC CTCGGCCATCGAGCGGATGGTCCAGGAGCGCGGCAGTGCCGTGACCCGCACCAAGAGCGCCGACCGGGCCATGATCGAGG CCACCCTCTCCTCCGAGGTGGTCCTTGCGGGGACCATGGACGGCCGTTTTGCCTTCCCGAAGTTCCAGTCCGCCTTCGAC GGCATGTTCGCCATCGCCAAGACCATCGAGCTGGTGGCCAAGGGGGGGCTCTCCATCTCCAGGGTGGCGGCGGAGATTCC GCAGCGTGTCTTCCTCCAGACCCGGGTCCCCTGCGTCTGGGACATGAAGGGGGGGATCATGCGGAAGATGAGCGAGGACA GCCTCGACAAGGAGGCGAGCTTCATCGACGGGATCAAGGTCCATTTCGGCGAGGACTGGGCACTGGTGCTCCCGGACCAG TACCTCCCCTACGTTCACATCGTGGCCGAGGCCCGGGATGCCAAGACGGCCCAGAAGCTCCTCGATGAGTACAAGAAAAA GGTCGAGGGGTGGAAACGGGAACTGCAGTGA
Upstream 100 bases:
>100_bases TGAGGTGGCGAGATGGCGAGGTCGCGAGGTAGTTTAATCAATACTATCTCGCGACCTCGCTCCCTCACTACCTCGCTCAA TACATAAAAAGGAGCATCCC
Downstream 100 bases:
>100_bases GCGCCCCCCTCTCCGTCATATTCGTATGGCACATGCACCAGCCCTACTACAAGGATCCGGTGAAGGGGGAGTACGCCCTT CCCTGGACCTACCTCCACGC
Product: phosphoglucomutase/phosphomannomutase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 836; Mature: 836
Protein sequence:
>836_residues MKAVIMAGGFGTRIQPLTSSIPKPMIPLLNRPIMLHIVELLKKYEITDLVMLLYHQPAVIKNFFRDGTDFGVKITYVTPL QDMGTAGAVKCAEKFLDERFLVISGDLLTDFNLQKIIDSHEDNKALATITLTSVKDPLQFGVVITDKEKRITQFLEKPGW GEVISDTINTGIYVFEPEIFAHIPEEENYDFSQDLFPKLLEQQKPLFGYTAKGYWRDIGNTDSYREAHHDIFKGKVNVKI DEAKQDLVGKDLRLGSDVNLDEHVTLEGTVVVGDNSQVFESAHIKDTVIGRNCTIEPGVRLNRCVIWDNVYVKKGAKLND GVLCSNVRVGHGVVMEEGVIVADDTSIGEEAYIKRDVKIWPRKVIEAGATVTGNLIWGEKWKKSLFEGAMVKGLTNMELT PEFVAKLGCAYGTMLPKGSHIISGRDSYRSCRMLKRSFIGGLLSAGINVRDLTMVPMPVLRYKLRTFGEVGGIYFRQAID DPASTEIVFLDGDGLDFSSSMGKNVERIFFKENFRRAHHTEPGALSEIPQQVTDFYREGFLHTIGKSPLQKKQFKVVIDF NHSSASQLLPGILTQMGCEVISLNAYVDEERGIQAVAERQQSLAQLSKIVATLEASAGFWLDPGTEGVIVVDETGKVYEG AELLPLMVGLALRSGEKGLFAVPVSAPSAIERMVQERGSAVTRTKSADRAMIEATLSSEVVLAGTMDGRFAFPKFQSAFD GMFAIAKTIELVAKGGLSISRVAAEIPQRVFLQTRVPCVWDMKGGIMRKMSEDSLDKEASFIDGIKVHFGEDWALVLPDQ YLPYVHIVAEARDAKTAQKLLDEYKKKVEGWKRELQ
Sequences:
>Translated_836_residues MKAVIMAGGFGTRIQPLTSSIPKPMIPLLNRPIMLHIVELLKKYEITDLVMLLYHQPAVIKNFFRDGTDFGVKITYVTPL QDMGTAGAVKCAEKFLDERFLVISGDLLTDFNLQKIIDSHEDNKALATITLTSVKDPLQFGVVITDKEKRITQFLEKPGW GEVISDTINTGIYVFEPEIFAHIPEEENYDFSQDLFPKLLEQQKPLFGYTAKGYWRDIGNTDSYREAHHDIFKGKVNVKI DEAKQDLVGKDLRLGSDVNLDEHVTLEGTVVVGDNSQVFESAHIKDTVIGRNCTIEPGVRLNRCVIWDNVYVKKGAKLND GVLCSNVRVGHGVVMEEGVIVADDTSIGEEAYIKRDVKIWPRKVIEAGATVTGNLIWGEKWKKSLFEGAMVKGLTNMELT PEFVAKLGCAYGTMLPKGSHIISGRDSYRSCRMLKRSFIGGLLSAGINVRDLTMVPMPVLRYKLRTFGEVGGIYFRQAID DPASTEIVFLDGDGLDFSSSMGKNVERIFFKENFRRAHHTEPGALSEIPQQVTDFYREGFLHTIGKSPLQKKQFKVVIDF NHSSASQLLPGILTQMGCEVISLNAYVDEERGIQAVAERQQSLAQLSKIVATLEASAGFWLDPGTEGVIVVDETGKVYEG AELLPLMVGLALRSGEKGLFAVPVSAPSAIERMVQERGSAVTRTKSADRAMIEATLSSEVVLAGTMDGRFAFPKFQSAFD GMFAIAKTIELVAKGGLSISRVAAEIPQRVFLQTRVPCVWDMKGGIMRKMSEDSLDKEASFIDGIKVHFGEDWALVLPDQ YLPYVHIVAEARDAKTAQKLLDEYKKKVEGWKRELQ >Mature_836_residues MKAVIMAGGFGTRIQPLTSSIPKPMIPLLNRPIMLHIVELLKKYEITDLVMLLYHQPAVIKNFFRDGTDFGVKITYVTPL QDMGTAGAVKCAEKFLDERFLVISGDLLTDFNLQKIIDSHEDNKALATITLTSVKDPLQFGVVITDKEKRITQFLEKPGW GEVISDTINTGIYVFEPEIFAHIPEEENYDFSQDLFPKLLEQQKPLFGYTAKGYWRDIGNTDSYREAHHDIFKGKVNVKI DEAKQDLVGKDLRLGSDVNLDEHVTLEGTVVVGDNSQVFESAHIKDTVIGRNCTIEPGVRLNRCVIWDNVYVKKGAKLND GVLCSNVRVGHGVVMEEGVIVADDTSIGEEAYIKRDVKIWPRKVIEAGATVTGNLIWGEKWKKSLFEGAMVKGLTNMELT PEFVAKLGCAYGTMLPKGSHIISGRDSYRSCRMLKRSFIGGLLSAGINVRDLTMVPMPVLRYKLRTFGEVGGIYFRQAID DPASTEIVFLDGDGLDFSSSMGKNVERIFFKENFRRAHHTEPGALSEIPQQVTDFYREGFLHTIGKSPLQKKQFKVVIDF NHSSASQLLPGILTQMGCEVISLNAYVDEERGIQAVAERQQSLAQLSKIVATLEASAGFWLDPGTEGVIVVDETGKVYEG AELLPLMVGLALRSGEKGLFAVPVSAPSAIERMVQERGSAVTRTKSADRAMIEATLSSEVVLAGTMDGRFAFPKFQSAFD GMFAIAKTIELVAKGGLSISRVAAEIPQRVFLQTRVPCVWDMKGGIMRKMSEDSLDKEASFIDGIKVHFGEDWALVLPDQ YLPYVHIVAEARDAKTAQKLLDEYKKKVEGWKRELQ
Specific function: Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate [H]
COG id: COG1208
COG function: function code MJ; Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phosphohexose mutase family [H]
Homologues:
Organism=Homo sapiens, GI11761621, Length=371, Percent_Identity=26.9541778975741, Blast_Score=154, Evalue=4e-37, Organism=Homo sapiens, GI11761619, Length=345, Percent_Identity=26.9565217391304, Blast_Score=143, Evalue=5e-34, Organism=Homo sapiens, GI31881779, Length=375, Percent_Identity=24, Blast_Score=87, Evalue=5e-17, Organism=Homo sapiens, GI45447090, Length=375, Percent_Identity=24, Blast_Score=87, Evalue=5e-17, Organism=Homo sapiens, GI83267879, Length=396, Percent_Identity=20.7070707070707, Blast_Score=78, Evalue=3e-14, Organism=Escherichia coli, GI1788351, Length=239, Percent_Identity=27.6150627615063, Blast_Score=79, Evalue=8e-16, Organism=Escherichia coli, GI1790224, Length=235, Percent_Identity=25.1063829787234, Blast_Score=72, Evalue=1e-13, Organism=Escherichia coli, GI1789566, Length=345, Percent_Identity=24.3478260869565, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI133931050, Length=370, Percent_Identity=28.3783783783784, Blast_Score=160, Evalue=2e-39, Organism=Caenorhabditis elegans, GI17509979, Length=329, Percent_Identity=23.7082066869301, Blast_Score=89, Evalue=8e-18, Organism=Caenorhabditis elegans, GI17509981, Length=316, Percent_Identity=22.7848101265823, Blast_Score=81, Evalue=2e-15, Organism=Saccharomyces cerevisiae, GI6320148, Length=372, Percent_Identity=30.1075268817204, Blast_Score=174, Evalue=7e-44, Organism=Saccharomyces cerevisiae, GI6320417, Length=429, Percent_Identity=21.2121212121212, Blast_Score=92, Evalue=3e-19, Organism=Drosophila melanogaster, GI21355443, Length=371, Percent_Identity=28.8409703504043, Blast_Score=155, Evalue=1e-37, Organism=Drosophila melanogaster, GI24644084, Length=371, Percent_Identity=28.8409703504043, Blast_Score=155, Evalue=1e-37, Organism=Drosophila melanogaster, GI24653912, Length=387, Percent_Identity=24.5478036175711, Blast_Score=100, Evalue=4e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005844 - InterPro: IPR016055 - InterPro: IPR005845 - InterPro: IPR005846 - InterPro: IPR005843 - InterPro: IPR016066 - InterPro: IPR005841 [H]
Pfam domain/function: PF02878 PGM_PMM_I; PF02879 PGM_PMM_II; PF02880 PGM_PMM_III; PF00408 PGM_PMM_IV [H]
EC number: =5.4.2.10 [H]
Molecular weight: Translated: 92883; Mature: 92883
Theoretical pI: Translated: 6.23; Mature: 6.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKAVIMAGGFGTRIQPLTSSIPKPMIPLLNRPIMLHIVELLKKYEITDLVMLLYHQPAVI CCEEEEECCCCCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHH KNFFRDGTDFGVKITYVTPLQDMGTAGAVKCAEKFLDERFLVISGDLLTDFNLQKIIDSH HHHHCCCCCCCEEEEEECCHHHCCCHHHHHHHHHHHCCEEEEEECCEECCCCHHHHHCCC EDNKALATITLTSVKDPLQFGVVITDKEKRITQFLEKPGWGEVISDTINTGIYVFEPEIF CCCCEEEEEEEECCCCCHHCCEEEECCHHHHHHHHHCCCCCHHHHHHHHCCEEEECCHHH AHIPEEENYDFSQDLFPKLLEQQKPLFGYTAKGYWRDIGNTDSYREAHHDIFKGKVNVKI EECCCCCCCCCCHHHHHHHHHHCCCCCEECCCCHHHCCCCCCHHHHHHHHHHCCEEEEEE DEAKQDLVGKDLRLGSDVNLDEHVTLEGTVVVGDNSQVFESAHIKDTVIGRNCTIEPGVR CHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEECCCCHHHHHCCCCCEEECCCCEECCCCC LNRCVIWDNVYVKKGAKLNDGVLCSNVRVGHGVVMEEGVIVADDTSIGEEAYIKRDVKIW EEEEEEECCEEEECCCCCCCCEEECCEEECCCEEEECCEEEECCCCCCCHHHHHCCHHHH PRKVIEAGATVTGNLIWGEKWKKSLFEGAMVKGLTNMELTPEFVAKLGCAYGTMLPKGSH HHHHHHCCCCEEEEEEECHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCE IISGRDSYRSCRMLKRSFIGGLLSAGINVRDLTMVPMPVLRYKLRTFGEVGGIYFRQAID EECCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCHHHHHHCC DPASTEIVFLDGDGLDFSSSMGKNVERIFFKENFRRAHHTEPGALSEIPQQVTDFYREGF CCCCCEEEEECCCCCCCHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCH LHTIGKSPLQKKQFKVVIDFNHSSASQLLPGILTQMGCEVISLNAYVDEERGIQAVAERQ HHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCHHHHHHHH QSLAQLSKIVATLEASAGFWLDPGTEGVIVVDETGKVYEGAELLPLMVGLALRSGEKGLF HHHHHHHHHHHHHHCCCCCEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCEE AVPVSAPSAIERMVQERGSAVTRTKSADRAMIEATLSSEVVLAGTMDGRFAFPKFQSAFD EEECCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHH GMFAIAKTIELVAKGGLSISRVAAEIPQRVFLQTRVPCVWDMKGGIMRKMSEDSLDKEAS HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHCHHCCHHHHH FIDGIKVHFGEDWALVLPDQYLPYVHIVAEARDAKTAQKLLDEYKKKVEGWKRELQ HHCCEEEEECCCEEEECCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKAVIMAGGFGTRIQPLTSSIPKPMIPLLNRPIMLHIVELLKKYEITDLVMLLYHQPAVI CCEEEEECCCCCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHH KNFFRDGTDFGVKITYVTPLQDMGTAGAVKCAEKFLDERFLVISGDLLTDFNLQKIIDSH HHHHCCCCCCCEEEEEECCHHHCCCHHHHHHHHHHHCCEEEEEECCEECCCCHHHHHCCC EDNKALATITLTSVKDPLQFGVVITDKEKRITQFLEKPGWGEVISDTINTGIYVFEPEIF CCCCEEEEEEEECCCCCHHCCEEEECCHHHHHHHHHCCCCCHHHHHHHHCCEEEECCHHH AHIPEEENYDFSQDLFPKLLEQQKPLFGYTAKGYWRDIGNTDSYREAHHDIFKGKVNVKI EECCCCCCCCCCHHHHHHHHHHCCCCCEECCCCHHHCCCCCCHHHHHHHHHHCCEEEEEE DEAKQDLVGKDLRLGSDVNLDEHVTLEGTVVVGDNSQVFESAHIKDTVIGRNCTIEPGVR CHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEECCCCHHHHHCCCCCEEECCCCEECCCCC LNRCVIWDNVYVKKGAKLNDGVLCSNVRVGHGVVMEEGVIVADDTSIGEEAYIKRDVKIW EEEEEEECCEEEECCCCCCCCEEECCEEECCCEEEECCEEEECCCCCCCHHHHHCCHHHH PRKVIEAGATVTGNLIWGEKWKKSLFEGAMVKGLTNMELTPEFVAKLGCAYGTMLPKGSH HHHHHHCCCCEEEEEEECHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCE IISGRDSYRSCRMLKRSFIGGLLSAGINVRDLTMVPMPVLRYKLRTFGEVGGIYFRQAID EECCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCHHHHHHCC DPASTEIVFLDGDGLDFSSSMGKNVERIFFKENFRRAHHTEPGALSEIPQQVTDFYREGF CCCCCEEEEECCCCCCCHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCH LHTIGKSPLQKKQFKVVIDFNHSSASQLLPGILTQMGCEVISLNAYVDEERGIQAVAERQ HHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCHHHHHHHH QSLAQLSKIVATLEASAGFWLDPGTEGVIVVDETGKVYEGAELLPLMVGLALRSGEKGLF HHHHHHHHHHHHHHCCCCCEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCEE AVPVSAPSAIERMVQERGSAVTRTKSADRAMIEATLSSEVVLAGTMDGRFAFPKFQSAFD EEECCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHH GMFAIAKTIELVAKGGLSISRVAAEIPQRVFLQTRVPCVWDMKGGIMRKMSEDSLDKEAS HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHCHHCCHHHHH FIDGIKVHFGEDWALVLPDQYLPYVHIVAEARDAKTAQKLLDEYKKKVEGWKRELQ HHCCEEEEECCCEEEECCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9679194 [H]