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The map label for this gene is ymdB [C]

Identifier: 78224200

GI number: 78224200

Start: 3391747

End: 3392268

Strand: Direct

Name: ymdB [C]

Synonym: Gmet_3007

Alternate gene names: 78224200

Gene position: 3391747-3392268 (Clockwise)

Preceding gene: 78224199

Following gene: 78224201

Centisome position: 84.85

GC content: 66.67

Gene sequence:

>522_bases
ATGAGGGAAAAGATCGAGATCATACCGGGGGATATCACGAAGCTGGCGGTGGACACCATTGTGAACGCGGCCAACAATTC
GCTCCTTGGGGGGGGCGGGGTTGACGGCGCCATCCACCGGGCCGCGGGGCCGGAGCTGCTGGCGGAGTGCCGGACCCTGA
ACGGCTGCGCCACCGGCGACGCCAAGATAACGAAGGGGTATCGCCTCCCGGCGAAGCACGTGATCCACACGGTGGGGCCG
GTGTGGCACGGGGGGGCTAAGGGTGAGCAAGAGCTTCTGAGGAGTTGCTACCGCCGCTGTTTCGAGGTGGCCCACGGGGC
CGGTCTCACCTCTATCGCCTTTCCGGCCATCAGCTGCGGGGTCTACGGCTATCCCCTGACTGAGGCGTGCGCCATTGCCG
TGGAGGAGACGAAGACAGCGCTGGAGCGCTATCCGGAGCTAGCGCGGGTGATCTTCACCCCCTTCGGTGCCGAGGCGGAG
GCCGCCTACCGGGCTGCCCTGGCGAAGGTGTTCGGCGCATGA

Upstream 100 bases:

>100_bases
ATCTACACCCATGTGCTGAACCGTGGCGGCAAAGGGGTGGAAAGTCCCCTTGATCGGCTGTAGAATTGTCCGGTAACGTC
ATTGCCACGGAGGTAACGCC

Downstream 100 bases:

>100_bases
AGGCGGTTATCCAGCGGGTAAGCGAGGCCAGGGTGGTGGTGGACGGCGAGGTTGTGGGAGCCATCGAGCGGGGAATTCTG
GTCCTTCTCGGGGTGGAGAA

Product: Appr-1-p processing

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 173

Protein sequence:

>173_residues
MREKIEIIPGDITKLAVDTIVNAANNSLLGGGGVDGAIHRAAGPELLAECRTLNGCATGDAKITKGYRLPAKHVIHTVGP
VWHGGAKGEQELLRSCYRRCFEVAHGAGLTSIAFPAISCGVYGYPLTEACAIAVEETKTALERYPELARVIFTPFGAEAE
AAYRAALAKVFGA

Sequences:

>Translated_173_residues
MREKIEIIPGDITKLAVDTIVNAANNSLLGGGGVDGAIHRAAGPELLAECRTLNGCATGDAKITKGYRLPAKHVIHTVGP
VWHGGAKGEQELLRSCYRRCFEVAHGAGLTSIAFPAISCGVYGYPLTEACAIAVEETKTALERYPELARVIFTPFGAEAE
AAYRAALAKVFGA
>Mature_173_residues
MREKIEIIPGDITKLAVDTIVNAANNSLLGGGGVDGAIHRAAGPELLAECRTLNGCATGDAKITKGYRLPAKHVIHTVGP
VWHGGAKGEQELLRSCYRRCFEVAHGAGLTSIAFPAISCGVYGYPLTEACAIAVEETKTALERYPELARVIFTPFGAEAE
AAYRAALAKVFGA

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI13569840, Length=173, Percent_Identity=52.6011560693642, Blast_Score=167, Evalue=3e-42,
Organism=Homo sapiens, GI117968621, Length=174, Percent_Identity=51.1494252873563, Blast_Score=164, Evalue=4e-41,
Organism=Homo sapiens, GI207450721, Length=170, Percent_Identity=35.8823529411765, Blast_Score=103, Evalue=1e-22,
Organism=Homo sapiens, GI8923143, Length=170, Percent_Identity=35.8823529411765, Blast_Score=102, Evalue=1e-22,
Organism=Homo sapiens, GI154813199, Length=172, Percent_Identity=35.4651162790698, Blast_Score=93, Evalue=1e-19,
Organism=Homo sapiens, GI20336746, Length=174, Percent_Identity=29.8850574712644, Blast_Score=80, Evalue=9e-16,
Organism=Homo sapiens, GI226371718, Length=183, Percent_Identity=28.9617486338798, Blast_Score=78, Evalue=5e-15,
Organism=Homo sapiens, GI226371716, Length=183, Percent_Identity=28.9617486338798, Blast_Score=78, Evalue=5e-15,
Organism=Homo sapiens, GI226371714, Length=183, Percent_Identity=28.9617486338798, Blast_Score=78, Evalue=5e-15,
Organism=Homo sapiens, GI226371712, Length=183, Percent_Identity=28.9617486338798, Blast_Score=78, Evalue=5e-15,
Organism=Homo sapiens, GI226371710, Length=183, Percent_Identity=28.9617486338798, Blast_Score=78, Evalue=5e-15,
Organism=Homo sapiens, GI226371706, Length=183, Percent_Identity=28.9617486338798, Blast_Score=78, Evalue=5e-15,
Organism=Homo sapiens, GI93141020, Length=181, Percent_Identity=29.8342541436464, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI4758496, Length=181, Percent_Identity=29.8342541436464, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI93141018, Length=181, Percent_Identity=29.8342541436464, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI165377137, Length=125, Percent_Identity=31.2, Blast_Score=66, Evalue=1e-11,
Organism=Escherichia coli, GI1787283, Length=173, Percent_Identity=50.2890173410405, Blast_Score=159, Evalue=1e-40,
Organism=Caenorhabditis elegans, GI17538214, Length=155, Percent_Identity=49.0322580645161, Blast_Score=138, Evalue=2e-33,
Organism=Drosophila melanogaster, GI24586353, Length=136, Percent_Identity=36.0294117647059, Blast_Score=80, Evalue=8e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 18196; Mature: 18196

Theoretical pI: Translated: 7.42; Mature: 7.42

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MREKIEIIPGDITKLAVDTIVNAANNSLLGGGGVDGAIHRAAGPELLAECRTLNGCATGD
CCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCHHHHHHHHHCCCCCCCC
AKITKGYRLPAKHVIHTVGPVWHGGAKGEQELLRSCYRRCFEVAHGAGLTSIAFPAISCG
CHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC
VYGYPLTEACAIAVEETKTALERYPELARVIFTPFGAEAEAAYRAALAKVFGA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MREKIEIIPGDITKLAVDTIVNAANNSLLGGGGVDGAIHRAAGPELLAECRTLNGCATGD
CCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCHHHHHHHHHCCCCCCCC
AKITKGYRLPAKHVIHTVGPVWHGGAKGEQELLRSCYRRCFEVAHGAGLTSIAFPAISCG
CHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC
VYGYPLTEACAIAVEETKTALERYPELARVIFTPFGAEAEAAYRAALAKVFGA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]