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The map label for this gene is sigZ [H]

Identifier: 78223988

GI number: 78223988

Start: 3156610

End: 3157230

Strand: Reverse

Name: sigZ [H]

Synonym: Gmet_2792

Alternate gene names: 78223988

Gene position: 3157230-3156610 (Counterclockwise)

Preceding gene: 78223989

Following gene: 78223987

Centisome position: 78.98

GC content: 53.3

Gene sequence:

>621_bases
TTGGACACCGGTCGGGCGGAAAAGCTGCCCGAACGGGTCAACTGCGTGACCCGTTATGCCAGAGAATTTACAATGAAGAC
ATCAGAACAAATTTGGCAAGAATATCATTTAAGGCTTCGCGCCTTCATCAAGAGCAGGATTGCCGATGACGCAGTTGCAG
ATGACACTCTTCAAAACGTATTCCTGAAGATGCATGCCGGACTGCCGTCCCTGAAGGACGGGACAAAGCTGCAAAGCTGG
CTCTACCAGATTGCGCGAAATGCCATCATCGATCTTTATCGCTCGCAAAAGGCCTCGACCGGTATTCCTGTGTCGTTGGC
GCACCCGGAATCGAATCCGGGCGAAAAGGCCGTTCAAGAGTTGTCCGACTGTCTTCAGCCCATGATACAACGGTTGCCGG
AGATTTATCGGGAAGCGATCATTCTGTCGGAATTGGAAGGCTTGACGCAAAGGGAGGTTGCGGAGGTGCTGGGGACGTCA
CTTTCCGGCGCCAAATCGCGAGTACAGCGCGGACGCGCTCTGCTGAAGGGAATGATAGCTGATTGCTGCCGGCTTGAGTT
AGACCATAACGGACGGCTCTGCGATTACGAACGCAAAGGCAAAGCTTGTGATGCTTGCTGA

Upstream 100 bases:

>100_bases
GGATCGTCAATGGCTGGAGACAACCCAAAGAGATCAGCCCTGGACACGAGACAAAAGTAAAAAGGCAGAAGGCTAAAAAG
GAGAAGTCCCAACTGGTCAG

Downstream 100 bases:

>100_bases
TTACCAGCAGCGTTAATGTTGCGTCCTTTTTGATCTTTTGCCGTCTATAGGGTGAGCGCTGCTCATAAACCCTATTGAGG
AGGTGCAAAATGGACAAGCA

Product: RNA polymerase sigma factor SigZ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 206

Protein sequence:

>206_residues
MDTGRAEKLPERVNCVTRYAREFTMKTSEQIWQEYHLRLRAFIKSRIADDAVADDTLQNVFLKMHAGLPSLKDGTKLQSW
LYQIARNAIIDLYRSQKASTGIPVSLAHPESNPGEKAVQELSDCLQPMIQRLPEIYREAIILSELEGLTQREVAEVLGTS
LSGAKSRVQRGRALLKGMIADCCRLELDHNGRLCDYERKGKACDAC

Sequences:

>Translated_206_residues
MDTGRAEKLPERVNCVTRYAREFTMKTSEQIWQEYHLRLRAFIKSRIADDAVADDTLQNVFLKMHAGLPSLKDGTKLQSW
LYQIARNAIIDLYRSQKASTGIPVSLAHPESNPGEKAVQELSDCLQPMIQRLPEIYREAIILSELEGLTQREVAEVLGTS
LSGAKSRVQRGRALLKGMIADCCRLELDHNGRLCDYERKGKACDAC
>Mature_206_residues
MDTGRAEKLPERVNCVTRYAREFTMKTSEQIWQEYHLRLRAFIKSRIADDAVADDTLQNVFLKMHAGLPSLKDGTKLQSW
LYQIARNAIIDLYRSQKASTGIPVSLAHPESNPGEKAVQELSDCLQPMIQRLPEIYREAIILSELEGLTQREVAEVLGTS
LSGAKSRVQRGRALLKGMIADCCRLELDHNGRLCDYERKGKACDAC

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014304
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 23237; Mature: 23237

Theoretical pI: Translated: 8.05; Mature: 8.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTGRAEKLPERVNCVTRYAREFTMKTSEQIWQEYHLRLRAFIKSRIADDAVADDTLQNV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLKMHAGLPSLKDGTKLQSWLYQIARNAIIDLYRSQKASTGIPVSLAHPESNPGEKAVQE
HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHH
LSDCLQPMIQRLPEIYREAIILSELEGLTQREVAEVLGTSLSGAKSRVQRGRALLKGMIA
HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
DCCRLELDHNGRLCDYERKGKACDAC
HHHHHHCCCCCCCCCHHHCCCCCCCC
>Mature Secondary Structure
MDTGRAEKLPERVNCVTRYAREFTMKTSEQIWQEYHLRLRAFIKSRIADDAVADDTLQNV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLKMHAGLPSLKDGTKLQSWLYQIARNAIIDLYRSQKASTGIPVSLAHPESNPGEKAVQE
HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHH
LSDCLQPMIQRLPEIYREAIILSELEGLTQREVAEVLGTSLSGAKSRVQRGRALLKGMIA
HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
DCCRLELDHNGRLCDYERKGKACDAC
HHHHHHCCCCCCCCCHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9308178; 9384377 [H]