Click here to switch to the map view.

The map label for this gene is bphB [H]

Identifier: 78223908

GI number: 78223908

Start: 3062882

End: 3064126

Strand: Direct

Name: bphB [H]

Synonym: Gmet_2712

Alternate gene names: 78223908

Gene position: 3062882-3064126 (Clockwise)

Preceding gene: 78223907

Following gene: 78223910

Centisome position: 76.62

GC content: 58.31

Gene sequence:

>1245_bases
ATGGGAGCAACCACGGAACAAAGCAACGGCAACATCCTCATCATCGAAGACAGCCCCACCCAGTCAGCACAACTTCGCCA
CATCATGGAAACGAACGGCTACCACGTCATTTCGGCCTGCAACGGCAGGGAGGCCCTGGCGCTCCTTTCCGGGCAGACAC
CTTCTCTTATCATCAGCGACGTCATCATGCCGGGAATCGACGGCTATGAGCTGTGCCGCAGGATCAAGGAACGGGAAGAT
TCCAGGAACATACCCGTCATCCTCCTGACCTCCCTTTCCGATCCCCATGATGTCATCAGGGGGCTCGAGTGCGGCGCCGA
CAATTTCATCACCAAGCCCTGCAACGAGAAGCACCTTCTCTCCCGTGTCAGCTACCTGCTGGAAAGCCGGAATCCATGCC
AGATCGAAGCGCGATCAGGCCTTGAAATCCTCTTCGGCGGAGAACGCTACTGCATAACCGCGGACCGCAGGCAGATCCTC
GACCTCCTCCTCTGCACCTACGAAACCGCCATTCAGAAGAATGACGCACTGATCAGGGCGCAGGACGAACTGAGCCGGCT
CAACCAGCAACTCGAAACCACGAACCGTGAGCTGGAGGCATTCAACTACACGGTTTCCCACGACCTCCGCTCCCCCCTGA
CAAACATCAGCGGCTACTGCCAGGTGCTTCAGGAACTCCACGGCGACACCCTTGATCCTACCTGCCAGGATTACATCCAG
GAAATATATCGGGCGACCATGCGGATGAACGACCTGATCGGCGACCTGATGGAATTTTCGCGGCTGAACCACCAGGAACT
GCAGCGGCAGGAGGTGAATCTCAGCACCATGGCCCGCATCATTGCCGTGGAACTGAAATCGAAAGACAGGGAGCGGCGGG
TCGAGTTCAGAATCGCCGATGGAATCGTCGGCAACGGGGACTCGCGGCTGCTGCAACTGGTGCTGGTGAACCTCCTGGGG
AATGCCTGGAAGTACACCGGCAAAAAGGAGAACGCCGTGATCGAGTTCGGCGTCACCAATACTGAGGGGAAAGAGGTCTA
CTTCGTCCGCGACAACGGAGCAGGCTTCGACATGGCCGAGGCCCACCGCCTTTTCGGCACCTTTCAGCGCCTGCACAGCA
AGCAGGAGTTCGAAGGAACCGGCATCGGCCTTGCCACGGTTCAGCGCATCATCCAGCGGCATGGGGGAAGTATCCGGGGC
GAGGGAGAGGTCGGAAAGGGAGCAACCTTTTACTTCACGCTGTAA

Upstream 100 bases:

>100_bases
GGAATGCCGGGCGAGGCCCTGAAACTGGGGGCAGCGACCCACACGCTCCCTCCCGACCGGATCGTGACCGCCCTTACCAG
CCTGGCTATGGAGAAGTGAC

Downstream 100 bases:

>100_bases
TTACTTGATCCCCCCCGCCACCTTCTGCAGCACCTCCCAGCTCTTCAGGAGATCCAGGGCACGGGCGAGCTGAAAGTCCT
TCTTCGCATCATCCTCCGGC

Product: response regulator receiver sensor signal transduction histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 414; Mature: 413

Protein sequence:

>414_residues
MGATTEQSNGNILIIEDSPTQSAQLRHIMETNGYHVISACNGREALALLSGQTPSLIISDVIMPGIDGYELCRRIKERED
SRNIPVILLTSLSDPHDVIRGLECGADNFITKPCNEKHLLSRVSYLLESRNPCQIEARSGLEILFGGERYCITADRRQIL
DLLLCTYETAIQKNDALIRAQDELSRLNQQLETTNRELEAFNYTVSHDLRSPLTNISGYCQVLQELHGDTLDPTCQDYIQ
EIYRATMRMNDLIGDLMEFSRLNHQELQRQEVNLSTMARIIAVELKSKDRERRVEFRIADGIVGNGDSRLLQLVLVNLLG
NAWKYTGKKENAVIEFGVTNTEGKEVYFVRDNGAGFDMAEAHRLFGTFQRLHSKQEFEGTGIGLATVQRIIQRHGGSIRG
EGEVGKGATFYFTL

Sequences:

>Translated_414_residues
MGATTEQSNGNILIIEDSPTQSAQLRHIMETNGYHVISACNGREALALLSGQTPSLIISDVIMPGIDGYELCRRIKERED
SRNIPVILLTSLSDPHDVIRGLECGADNFITKPCNEKHLLSRVSYLLESRNPCQIEARSGLEILFGGERYCITADRRQIL
DLLLCTYETAIQKNDALIRAQDELSRLNQQLETTNRELEAFNYTVSHDLRSPLTNISGYCQVLQELHGDTLDPTCQDYIQ
EIYRATMRMNDLIGDLMEFSRLNHQELQRQEVNLSTMARIIAVELKSKDRERRVEFRIADGIVGNGDSRLLQLVLVNLLG
NAWKYTGKKENAVIEFGVTNTEGKEVYFVRDNGAGFDMAEAHRLFGTFQRLHSKQEFEGTGIGLATVQRIIQRHGGSIRG
EGEVGKGATFYFTL
>Mature_413_residues
GATTEQSNGNILIIEDSPTQSAQLRHIMETNGYHVISACNGREALALLSGQTPSLIISDVIMPGIDGYELCRRIKEREDS
RNIPVILLTSLSDPHDVIRGLECGADNFITKPCNEKHLLSRVSYLLESRNPCQIEARSGLEILFGGERYCITADRRQILD
LLLCTYETAIQKNDALIRAQDELSRLNQQLETTNRELEAFNYTVSHDLRSPLTNISGYCQVLQELHGDTLDPTCQDYIQE
IYRATMRMNDLIGDLMEFSRLNHQELQRQEVNLSTMARIIAVELKSKDRERRVEFRIADGIVGNGDSRLLQLVLVNLLGN
AWKYTGKKENAVIEFGVTNTEGKEVYFVRDNGAGFDMAEAHRLFGTFQRLHSKQEFEGTGIGLATVQRIIQRHGGSIRGE
GEVGKGATFYFTL

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG0642

COG function: function code T; Signal transduction histidine kinase

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI1788549, Length=213, Percent_Identity=32.8638497652582, Blast_Score=102, Evalue=5e-23,
Organism=Escherichia coli, GI1789149, Length=273, Percent_Identity=26.7399267399267, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1786599, Length=125, Percent_Identity=32.8, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI48994928, Length=244, Percent_Identity=27.8688524590164, Blast_Score=86, Evalue=6e-18,
Organism=Escherichia coli, GI1789809, Length=248, Percent_Identity=28.6290322580645, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI145693157, Length=241, Percent_Identity=28.2157676348548, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1790863, Length=240, Percent_Identity=28.3333333333333, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788394, Length=127, Percent_Identity=31.496062992126, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1786600, Length=277, Percent_Identity=25.9927797833935, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1786912, Length=274, Percent_Identity=24.8175182481752, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790436, Length=211, Percent_Identity=27.0142180094787, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1787229, Length=117, Percent_Identity=35.8974358974359, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI87082012, Length=113, Percent_Identity=31.858407079646, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1786784, Length=128, Percent_Identity=31.25, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1790860, Length=117, Percent_Identity=31.6239316239316, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786783, Length=221, Percent_Identity=26.2443438914027, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788713, Length=170, Percent_Identity=30, Blast_Score=65, Evalue=9e-12,
Organism=Escherichia coli, GI1790551, Length=223, Percent_Identity=27.3542600896861, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789808, Length=197, Percent_Identity=29.9492385786802, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1790861, Length=225, Percent_Identity=26.2222222222222, Blast_Score=63, Evalue=4e-11,
Organism=Escherichia coli, GI1787487, Length=114, Percent_Identity=29.8245614035088, Blast_Score=63, Evalue=4e-11,
Organism=Escherichia coli, GI1787375, Length=116, Percent_Identity=28.448275862069, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1788905, Length=127, Percent_Identity=29.1338582677165, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI2367329, Length=117, Percent_Identity=32.4786324786325, Blast_Score=62, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 46602; Mature: 46470

Theoretical pI: Translated: 5.35; Mature: 5.35

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGATTEQSNGNILIIEDSPTQSAQLRHIMETNGYHVISACNGREALALLSGQTPSLIISD
CCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEECCCCCEEEEECCCCCHHHHHH
VIMPGIDGYELCRRIKEREDSRNIPVILLTSLSDPHDVIRGLECGADNFITKPCNEKHLL
HHHCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCHHHHH
SRVSYLLESRNPCQIEARSGLEILFGGERYCITADRRQILDLLLCTYETAIQKNDALIRA
HHHHHHHHCCCCCEEEECCCCEEEECCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEE
QDELSRLNQQLETTNRELEAFNYTVSHDLRSPLTNISGYCQVLQELHGDTLDPTCQDYIQ
HHHHHHHHHHHHHHCHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
EIYRATMRMNDLIGDLMEFSRLNHQELQRQEVNLSTMARIIAVELKSKDRERRVEFRIAD
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHCCCCHHEEEEEEEC
GIVGNGDSRLLQLVLVNLLGNAWKYTGKKENAVIEFGVTNTEGKEVYFVRDNGAGFDMAE
CEECCCHHHHHHHHHHHHHCCHHCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCCCHHH
AHRLFGTFQRLHSKQEFEGTGIGLATVQRIIQRHGGSIRGEGEVGKGATFYFTL
HHHHHHHHHHHHCCHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEC
>Mature Secondary Structure 
GATTEQSNGNILIIEDSPTQSAQLRHIMETNGYHVISACNGREALALLSGQTPSLIISD
CCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEECCCCCEEEEECCCCCHHHHHH
VIMPGIDGYELCRRIKEREDSRNIPVILLTSLSDPHDVIRGLECGADNFITKPCNEKHLL
HHHCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCHHHHH
SRVSYLLESRNPCQIEARSGLEILFGGERYCITADRRQILDLLLCTYETAIQKNDALIRA
HHHHHHHHCCCCCEEEECCCCEEEECCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEE
QDELSRLNQQLETTNRELEAFNYTVSHDLRSPLTNISGYCQVLQELHGDTLDPTCQDYIQ
HHHHHHHHHHHHHHCHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
EIYRATMRMNDLIGDLMEFSRLNHQELQRQEVNLSTMARIIAVELKSKDRERRVEFRIAD
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHCCCCHHEEEEEEEC
GIVGNGDSRLLQLVLVNLLGNAWKYTGKKENAVIEFGVTNTEGKEVYFVRDNGAGFDMAE
CEECCCHHHHHHHHHHHHHCCHHCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCCCHHH
AHRLFGTFQRLHSKQEFEGTGIGLATVQRIIQRHGGSIRGEGEVGKGATFYFTL
HHHHHHHHHHHHCCHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]