Click here to switch to the map view.

The map label for this gene is degT [H]

Identifier: 78223554

GI number: 78223554

Start: 2658808

End: 2659908

Strand: Reverse

Name: degT [H]

Synonym: Gmet_2351

Alternate gene names: 78223554

Gene position: 2659908-2658808 (Counterclockwise)

Preceding gene: 78223555

Following gene: 78223553

Centisome position: 66.54

GC content: 62.22

Gene sequence:

>1101_bases
ATGAATATTCCGATGGTGGATTTGAAGGTGCAGTATCATGCAATAAAGGAGGAGATCGACAGGGGCATTCTGGAAGCCCT
TGAAAAGACCCAGTTCATTCTCGGGCCCAACGTGACGGCGTTCGAGGAGGAAGCGGCCGCGTTTCTCGGCGTAAAGCATG
CCATCGGCGTTGCCTCGGGGACCGACGCCCTCCACCTGGCCCTTGCCGCTGCAGGGATCACGGAGGGTGATGAGGTGATC
ACCTCTCCCTTCACCTTTATCGCCACTGCCGAGGCGATCCGTTACGTGGGGGCCACGCCGGTCTTCGTGGACGTGGACCC
CAAGAGCTTCAATATCGATCCTGCCAGGATCGAGGCGGCCATCACCCCCAGGACCAAGGCGGTCCTTCCGGTTCATCTCT
TCGGCCAGCCGGCGGACATGGATGCCATCCAGGCCCTCTGCACCAAGCATGGTCTTTTGATGATCGAAGACTGCGCCCAG
TCCTTCGGCGCCGACGTTAATGGTCGCATGACCGGCACCTTCGGGGCGCTGGGGGCCTTCAGCTTCTTCCCCAGCAAGAA
CCTGGGGTGCTATGGCGATGGCGGCCTTGTCACCACCTCCTGCCCGGAACTGGCCGAGCGGGTGAAGGTGCTCCGCAACC
ACGGGAGCAAGGTTCGCTACCATCACTCGGTCATTGGCTACAACAGCCGCCTTGACGAGATACAGGCCGTGATCCTGCGG
GTGAAGCTCAAGCACATCCGGGAATACAGCGAGGGGCGCCGCCGCGTGGCTCACCTCTACAGCGAACTGCTGGCCGGCAC
CGGCGCCACCCCTCCCTTCGAGGATGGCAAGGGAACCCATGTCTACCACCAGTACACGCTTCTCACCGACCGCCGCGACG
CCATCATGAAGGCCCTCACCGACGCGGGGATTGCCTCGGCGGTTTACTATCCGATTCCTCTGCACAAGCAGGATGTCTTC
GCCGCCGACTACGCCGGTGTTTCCCTCCCCGCGGCCGAGGAGGTGGCATCCCGCTGCATGTCCCTCCCCATCTTCCCGGA
GATGACCGAAGAACAGGTACGCCGGGTCGTGGACGTGGTGAAATCGGCCCTCAAGGCATAG

Upstream 100 bases:

>100_bases
AGTGCGTCCGGACGGGCGCAAAGCCGGTGGTATCGGGCCAGGACGGCAAGCGGGCGCTGGAAACGGCGATAAAGATCAGC
AAAAAACTGTGAGGGAAACC

Downstream 100 bases:

>100_bases
CCGGAAGCAACGCTTTCGTGCATGAAAGGGAGAGACGCCCCCCGTGGGCGTCTCTTTGTATTCGTATGGGTACCGCTCCG
AACAAACGCGTGATGATCGT

Product: DegT/DnrJ/EryC1/StrS aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 366; Mature: 366

Protein sequence:

>366_residues
MNIPMVDLKVQYHAIKEEIDRGILEALEKTQFILGPNVTAFEEEAAAFLGVKHAIGVASGTDALHLALAAAGITEGDEVI
TSPFTFIATAEAIRYVGATPVFVDVDPKSFNIDPARIEAAITPRTKAVLPVHLFGQPADMDAIQALCTKHGLLMIEDCAQ
SFGADVNGRMTGTFGALGAFSFFPSKNLGCYGDGGLVTTSCPELAERVKVLRNHGSKVRYHHSVIGYNSRLDEIQAVILR
VKLKHIREYSEGRRRVAHLYSELLAGTGATPPFEDGKGTHVYHQYTLLTDRRDAIMKALTDAGIASAVYYPIPLHKQDVF
AADYAGVSLPAAEEVASRCMSLPIFPEMTEEQVRRVVDVVKSALKA

Sequences:

>Translated_366_residues
MNIPMVDLKVQYHAIKEEIDRGILEALEKTQFILGPNVTAFEEEAAAFLGVKHAIGVASGTDALHLALAAAGITEGDEVI
TSPFTFIATAEAIRYVGATPVFVDVDPKSFNIDPARIEAAITPRTKAVLPVHLFGQPADMDAIQALCTKHGLLMIEDCAQ
SFGADVNGRMTGTFGALGAFSFFPSKNLGCYGDGGLVTTSCPELAERVKVLRNHGSKVRYHHSVIGYNSRLDEIQAVILR
VKLKHIREYSEGRRRVAHLYSELLAGTGATPPFEDGKGTHVYHQYTLLTDRRDAIMKALTDAGIASAVYYPIPLHKQDVF
AADYAGVSLPAAEEVASRCMSLPIFPEMTEEQVRRVVDVVKSALKA
>Mature_366_residues
MNIPMVDLKVQYHAIKEEIDRGILEALEKTQFILGPNVTAFEEEAAAFLGVKHAIGVASGTDALHLALAAAGITEGDEVI
TSPFTFIATAEAIRYVGATPVFVDVDPKSFNIDPARIEAAITPRTKAVLPVHLFGQPADMDAIQALCTKHGLLMIEDCAQ
SFGADVNGRMTGTFGALGAFSFFPSKNLGCYGDGGLVTTSCPELAERVKVLRNHGSKVRYHHSVIGYNSRLDEIQAVILR
VKLKHIREYSEGRRRVAHLYSELLAGTGATPPFEDGKGTHVYHQYTLLTDRRDAIMKALTDAGIASAVYYPIPLHKQDVF
AADYAGVSLPAAEEVASRCMSLPIFPEMTEEQVRRVVDVVKSALKA

Specific function: This membrane protein may function as a sensor protein and may transfer the signal of environmental stimuli to the regulatory region of target genes to activate or repress transcription of the genes [H]

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=359, Percent_Identity=34.5403899721448, Blast_Score=194, Evalue=9e-51,
Organism=Escherichia coli, GI2367285, Length=317, Percent_Identity=32.807570977918, Blast_Score=148, Evalue=6e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 39682; Mature: 39682

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIPMVDLKVQYHAIKEEIDRGILEALEKTQFILGPNVTAFEEEAAAFLGVKHAIGVASG
CCCCEEEEEHHHHHHHHHHHHHHHHHHHHCEEEECCCCCHHHHHHHHHHHHHHHHCCCCC
TDALHLALAAAGITEGDEVITSPFTFIATAEAIRYVGATPVFVDVDPKSFNIDPARIEAA
CHHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHEEEE
ITPRTKAVLPVHLFGQPADMDAIQALCTKHGLLMIEDCAQSFGADVNGRMTGTFGALGAF
ECCCCCEEEEEEECCCCCCHHHHHHHHHHCCCEEEHHHHHHHCCCCCCEEEECHHHHHHH
SFFPSKNLGCYGDGGLVTTSCPELAERVKVLRNHGSKVRYHHSVIGYNSRLDEIQAVILR
HHCCCCCCCEECCCCEEECCCHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHHH
VKLKHIREYSEGRRRVAHLYSELLAGTGATPPFEDGKGTHVYHQYTLLTDRRDAIMKALT
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCHHHHHHHHHH
DAGIASAVYYPIPLHKQDVFAADYAGVSLPAAEEVASRCMSLPIFPEMTEEQVRRVVDVV
HCCHHHEEEECCCCCCCCCCCHHCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
KSALKA
HHHHCC
>Mature Secondary Structure
MNIPMVDLKVQYHAIKEEIDRGILEALEKTQFILGPNVTAFEEEAAAFLGVKHAIGVASG
CCCCEEEEEHHHHHHHHHHHHHHHHHHHHCEEEECCCCCHHHHHHHHHHHHHHHHCCCCC
TDALHLALAAAGITEGDEVITSPFTFIATAEAIRYVGATPVFVDVDPKSFNIDPARIEAA
CHHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHEEEE
ITPRTKAVLPVHLFGQPADMDAIQALCTKHGLLMIEDCAQSFGADVNGRMTGTFGALGAF
ECCCCCEEEEEEECCCCCCHHHHHHHHHHCCCEEEHHHHHHHCCCCCCEEEECHHHHHHH
SFFPSKNLGCYGDGGLVTTSCPELAERVKVLRNHGSKVRYHHSVIGYNSRLDEIQAVILR
HHCCCCCCCEECCCCEEECCCHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHHH
VKLKHIREYSEGRRRVAHLYSELLAGTGATPPFEDGKGTHVYHQYTLLTDRRDAIMKALT
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCHHHHHHHHHH
DAGIASAVYYPIPLHKQDVFAADYAGVSLPAAEEVASRCMSLPIFPEMTEEQVRRVVDVV
HCCHHHEEEECCCCCCCCCCCHHCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
KSALKA
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2104607 [H]