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The map label for this gene is kpsD [H]

Identifier: 78223390

GI number: 78223390

Start: 2468791

End: 2471292

Strand: Reverse

Name: kpsD [H]

Synonym: Gmet_2184

Alternate gene names: 78223390

Gene position: 2471292-2468791 (Counterclockwise)

Preceding gene: 78223391

Following gene: 78223389

Centisome position: 61.82

GC content: 59.99

Gene sequence:

>2502_bases
GTGTTGTGCGGTATTCACTTGGTTTTCGCCGCGGAATTTTTCCCAACCCTGTCCCGGGAGTTGCCACAGGCCTCCCCACA
CCGCCCTGCCGCAGCCTTGCCAACGTTTACATCCCTATCGTCGGCTGCCAAGGCCTCGCCCCCGGCAGAGGCTTCATCCC
CACGGAAAAATACTGAAGAAGGCAAGACGGTAACGGCAAAAGAATCCTCCGCGGATGCGGATGAGCTTTCCGCCATTGAA
AAAAGCGTTATTGCCAAAGCCGGCGCAGAAGACAATACCCGCCCTCAGCCCTACGAGGTTCAGGAGCTCAGGCAGTTCGG
GTACAACTTCTTCAGGCCAGCCGCGGCCGGTTTCGCTCCCCTTGCCGATATCCCGGTGGGCCCCGATTACGTTATCGGCC
CGGGAGACCGGATCATCCTGAACCTCTGGGGGAGCGCCGAAGGCACCCACGAACTGGAGGTGAACCGGAGCGGGGAAATC
GTGCTTCCGCGGGTGGGGAGCGTTAAGGTATGGGGAATCACCTTCGAGCGGCTGCCGGAGGTGCTGAAAACCCATTTGTC
GAAGATATACAAGAATTTCGACCTGAATGTGACCATGGGCAAGCTGCGTGTCATCAAGGTGTACGTGGTCGGCGAGGTGA
AGATGCCCGGCGACTACAACCTGAGCCCGCTCTCGACGCTGATCAACGCCCTTGCCGCATCGGGCGGCCCCCTGAAAACC
GGCACCCTGAGAAATATCAAGATCAAGCGTGGGGGGAAGGTCGTGGAAACGGTCGATCTCTACGATTTCTTCCTCAAGGG
GGACAAGGGAAAGGACATCCGTCTCCAACCCGGCGACACCATCTTCGTGCCGGTCATCGGCAGGGTCGCCGGAATCGCCG
GCAACGTGAAGCGCCCCGCCATCTATGAACTGAAGGACGAAAAGAACCTCGGCGATCTGGTTGAGCTGGCGGAAGGGTTC
CTTCCCACCGGCTATCTGCAGAGGGTGCAGATCACCAGGGTCGACGCCCATGACAAACGGATGGTTGCCGATTTCAACAT
CGATCCGAAAGGGGCGGGGAAATCCCTGGATCAGATCGTACAGGGGATAGCGATCCAGGATATGGATATCGTCAAGATAT
TCCCCATCAACGCCACCCTCCGTGACCATGTCCGGCTCGACGGGTACGTGCTCCGCCCCGGAGTCTATGCGCTCCAGCCC
CACATGCGGCTGAGCCAGCTCCTGTCCCAGGACAATCTCCTCACCGAATATTACAAGGATGCCGCGGAAATAACCCGGCT
CTACCCGCCGGATTCCCATCTGGAAAAAATATTCGTCAGTGTCGCCAAGGCGCTTGCGGGCGATCCCGAGCACGACCTGG
AACTGAAGGAGTTCGACGAGGTGCGGATCTTCTCCCGCTGGGAGATGGAGGAGATGCCGAAGGTCAAGGTGAACGGCGAG
GTGCAGCGGCCGGGAGAATATCGGCTCTTCGCCAACATGACGGTCCGCGATCTCCTCATGGAGGCCGGCAACCTCAAGAC
CTCCGCCTATCTGAAAAACGCCGAGATCAACCGGATATCCAAGACCGGCGAGTCGGTTTCATCGTTTCCCATCGTCATCA
ATCTGGAACAGGCCCTGAAGGGCGATCCGAAGGACAACCTGGTGCTCGCCCCTTTTGACGAGGTGACCATCAGGAAAATC
CCCAACTGGGCCGAGGAAAAGGAGCGATACGTCACGCTGCGCGGCGAGTTCAGGTTCCCCGGCGTCTATCCGATTCACAA
GGGGGAAAAGCTGAGCGCCCTGATCGAGCGTGCCGGCGGCTTTACGGACAAGGCATACCTGCGCGCCGCCAAATACACCA
GGGAGCCCCTTCGGGAGCTGCAGCAGAAGAGGATGGATGAGATGGTGGCCGCCTCCGAGCAGGAGATCCTGAAAAAACAG
GCCGAGCTGGCCACGACCGCATCCTCCAAGGAGGAAGTGGAGGCAACCAAGGCGGCCCTGGAGAGCCTGCAGCGCTCCGT
GGCGCTGCTGAAGACGGCGAAGGCGGAAGGGCGGCTGGTGATCCGTCTGGAACAACCCGACGCGTTCAAGGGAACTGCCT
CCGACGTGGAACTCATGGGGGGAGACACGCTGGAAGTGCCCCCGCAGCCCCATGCCGTGAGCGTCCTTGGGCAGGTCTAC
AACCCGACCAGCTTTATCCCCGAGAACAATGAGGATGTGGCGTTCTATCTGGAGAAGGCGGGCGGTCCGACCCGAAACGC
GGAAAAGTGCGACATCTATATCGTCCGCGCCGACGGGACGGTCTTGAGCCGCCAGCAGTCGTCCTTTGGCATCAACTGGA
GTGACTCCCAGCGTCGCTGGACCTTCGGCGGTTTCATGTCAACGACCCTGGAGCCGGGCGACACCGTCATAGTGCCCCAG
AGATTCGAGAGAATTGCCTGGATGCGGGAAATCAAGGATATAGCCGTCATCCTCGGCAACCTGGCCCTTGCGGCCGGGGT
GATAGTAGCGGCAGGTCTGTAG

Upstream 100 bases:

>100_bases
CCAAGGAAAAACAGAATTTCCGACAGGGCTGTGGGGAGCAAAGGAGAATCCCTTGAAAAGAGGAAATTCGTTTTTCTGTG
CCCTTCTCGGGTTGGTCGGG

Downstream 100 bases:

>100_bases
CGATGGCGGCGGAAAGGGAAAACCTACAAGGATTCGCGGAGTTCATATGATGCTGCATTCAGAAAATTCAACTGACGATA
CCCGCACCTCGAAACCCCTG

Product: polysaccharide export protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 833; Mature: 833

Protein sequence:

>833_residues
MLCGIHLVFAAEFFPTLSRELPQASPHRPAAALPTFTSLSSAAKASPPAEASSPRKNTEEGKTVTAKESSADADELSAIE
KSVIAKAGAEDNTRPQPYEVQELRQFGYNFFRPAAAGFAPLADIPVGPDYVIGPGDRIILNLWGSAEGTHELEVNRSGEI
VLPRVGSVKVWGITFERLPEVLKTHLSKIYKNFDLNVTMGKLRVIKVYVVGEVKMPGDYNLSPLSTLINALAASGGPLKT
GTLRNIKIKRGGKVVETVDLYDFFLKGDKGKDIRLQPGDTIFVPVIGRVAGIAGNVKRPAIYELKDEKNLGDLVELAEGF
LPTGYLQRVQITRVDAHDKRMVADFNIDPKGAGKSLDQIVQGIAIQDMDIVKIFPINATLRDHVRLDGYVLRPGVYALQP
HMRLSQLLSQDNLLTEYYKDAAEITRLYPPDSHLEKIFVSVAKALAGDPEHDLELKEFDEVRIFSRWEMEEMPKVKVNGE
VQRPGEYRLFANMTVRDLLMEAGNLKTSAYLKNAEINRISKTGESVSSFPIVINLEQALKGDPKDNLVLAPFDEVTIRKI
PNWAEEKERYVTLRGEFRFPGVYPIHKGEKLSALIERAGGFTDKAYLRAAKYTREPLRELQQKRMDEMVAASEQEILKKQ
AELATTASSKEEVEATKAALESLQRSVALLKTAKAEGRLVIRLEQPDAFKGTASDVELMGGDTLEVPPQPHAVSVLGQVY
NPTSFIPENNEDVAFYLEKAGGPTRNAEKCDIYIVRADGTVLSRQQSSFGINWSDSQRRWTFGGFMSTTLEPGDTVIVPQ
RFERIAWMREIKDIAVILGNLALAAGVIVAAGL

Sequences:

>Translated_833_residues
MLCGIHLVFAAEFFPTLSRELPQASPHRPAAALPTFTSLSSAAKASPPAEASSPRKNTEEGKTVTAKESSADADELSAIE
KSVIAKAGAEDNTRPQPYEVQELRQFGYNFFRPAAAGFAPLADIPVGPDYVIGPGDRIILNLWGSAEGTHELEVNRSGEI
VLPRVGSVKVWGITFERLPEVLKTHLSKIYKNFDLNVTMGKLRVIKVYVVGEVKMPGDYNLSPLSTLINALAASGGPLKT
GTLRNIKIKRGGKVVETVDLYDFFLKGDKGKDIRLQPGDTIFVPVIGRVAGIAGNVKRPAIYELKDEKNLGDLVELAEGF
LPTGYLQRVQITRVDAHDKRMVADFNIDPKGAGKSLDQIVQGIAIQDMDIVKIFPINATLRDHVRLDGYVLRPGVYALQP
HMRLSQLLSQDNLLTEYYKDAAEITRLYPPDSHLEKIFVSVAKALAGDPEHDLELKEFDEVRIFSRWEMEEMPKVKVNGE
VQRPGEYRLFANMTVRDLLMEAGNLKTSAYLKNAEINRISKTGESVSSFPIVINLEQALKGDPKDNLVLAPFDEVTIRKI
PNWAEEKERYVTLRGEFRFPGVYPIHKGEKLSALIERAGGFTDKAYLRAAKYTREPLRELQQKRMDEMVAASEQEILKKQ
AELATTASSKEEVEATKAALESLQRSVALLKTAKAEGRLVIRLEQPDAFKGTASDVELMGGDTLEVPPQPHAVSVLGQVY
NPTSFIPENNEDVAFYLEKAGGPTRNAEKCDIYIVRADGTVLSRQQSSFGINWSDSQRRWTFGGFMSTTLEPGDTVIVPQ
RFERIAWMREIKDIAVILGNLALAAGVIVAAGL
>Mature_833_residues
MLCGIHLVFAAEFFPTLSRELPQASPHRPAAALPTFTSLSSAAKASPPAEASSPRKNTEEGKTVTAKESSADADELSAIE
KSVIAKAGAEDNTRPQPYEVQELRQFGYNFFRPAAAGFAPLADIPVGPDYVIGPGDRIILNLWGSAEGTHELEVNRSGEI
VLPRVGSVKVWGITFERLPEVLKTHLSKIYKNFDLNVTMGKLRVIKVYVVGEVKMPGDYNLSPLSTLINALAASGGPLKT
GTLRNIKIKRGGKVVETVDLYDFFLKGDKGKDIRLQPGDTIFVPVIGRVAGIAGNVKRPAIYELKDEKNLGDLVELAEGF
LPTGYLQRVQITRVDAHDKRMVADFNIDPKGAGKSLDQIVQGIAIQDMDIVKIFPINATLRDHVRLDGYVLRPGVYALQP
HMRLSQLLSQDNLLTEYYKDAAEITRLYPPDSHLEKIFVSVAKALAGDPEHDLELKEFDEVRIFSRWEMEEMPKVKVNGE
VQRPGEYRLFANMTVRDLLMEAGNLKTSAYLKNAEINRISKTGESVSSFPIVINLEQALKGDPKDNLVLAPFDEVTIRKI
PNWAEEKERYVTLRGEFRFPGVYPIHKGEKLSALIERAGGFTDKAYLRAAKYTREPLRELQQKRMDEMVAASEQEILKKQ
AELATTASSKEEVEATKAALESLQRSVALLKTAKAEGRLVIRLEQPDAFKGTASDVELMGGDTLEVPPQPHAVSVLGQVY
NPTSFIPENNEDVAFYLEKAGGPTRNAEKCDIYIVRADGTVLSRQQSSFGINWSDSQRRWTFGGFMSTTLEPGDTVIVPQ
RFERIAWMREIKDIAVILGNLALAAGVIVAAGL

Specific function: Involved in the translocation of the polysialic acid capsule across the outer membrane to the cell surface. May function as the periplasmic binding element of the PSA transport system, in which it transiently interacts with the membrane component of the t

COG id: COG1596

COG function: function code M; Periplasmic protein involved in polysaccharide export

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli K5 kpsD [H]

Homologues:

Organism=Escherichia coli, GI1787218, Length=169, Percent_Identity=29.585798816568, Blast_Score=72, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003715 [H]

Pfam domain/function: PF02563 Poly_export [H]

EC number: NA

Molecular weight: Translated: 92011; Mature: 92011

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLCGIHLVFAAEFFPTLSRELPQASPHRPAAALPTFTSLSSAAKASPPAEASSPRKNTEE
CCEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCC
GKTVTAKESSADADELSAIEKSVIAKAGAEDNTRPQPYEVQELRQFGYNFFRPAAAGFAP
CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCHHHCHHHCCCCC
LADIPVGPDYVIGPGDRIILNLWGSAEGTHELEVNRSGEIVLPRVGSVKVWGITFERLPE
CCCCCCCCCEEECCCCEEEEEEECCCCCCEEEEECCCCCEEEECCCCEEEEECCHHHHHH
VLKTHLSKIYKNFDLNVTMGKLRVIKVYVVGEVKMPGDYNLSPLSTLINALAASGGPLKT
HHHHHHHHHHHCCCCEEEECCEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCC
GTLRNIKIKRGGKVVETVDLYDFFLKGDKGKDIRLQPGDTIFVPVIGRVAGIAGNVKRPA
CCEEEEEEECCCCEEEEEHHHHHHEECCCCCEEEECCCCEEEEEHHHHHHHCCCCCCCCE
IYELKDEKNLGDLVELAEGFLPTGYLQRVQITRVDAHDKRMVADFNIDPKGAGKSLDQIV
EEEECCCCCHHHHHHHHHCCCCCCHHEEEEEEEECCCCCEEEEECCCCCCCCCCHHHHHH
QGIAIQDMDIVKIFPINATLRDHVRLDGYVLRPGVYALQPHMRLSQLLSQDNLLTEYYKD
HCCEECCCCEEEEEECCCCHHCCEEECCEEECCCCEEECCHHHHHHHHCCCCHHHHHHHH
AAEITRLYPPDSHLEKIFVSVAKALAGDPEHDLELKEFDEVRIFSRWEMEEMPKVKVNGE
HHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHCCHHHEEECCCHHHCCEEEECCC
VQRPGEYRLFANMTVRDLLMEAGNLKTSAYLKNAEINRISKTGESVSSFPIVINLEQALK
EECCCCEEEEECCHHHHHHHHCCCCCHHHEEECCHHHHHHHCCCCCCCCCEEEEEHHHHC
GDPKDNLVLAPFDEVTIRKIPNWAEEKERYVTLRGEFRFPGVYPIHKGEKLSALIERAGG
CCCCCCEEECCCCCHHHHHCCCHHHCCCEEEEEEECEECCCCCCCCCCHHHHHHHHHHCC
FTDKAYLRAAKYTREPLRELQQKRMDEMVAASEQEILKKQAELATTASSKEEVEATKAAL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
ESLQRSVALLKTAKAEGRLVIRLEQPDAFKGTASDVELMGGDTLEVPPQPHAVSVLGQVY
HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEECCCEEECCCCCHHHHHHHHHC
NPTSFIPENNEDVAFYLEKAGGPTRNAEKCDIYIVRADGTVLSRQQSSFGINWSDSQRRW
CCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCEEECCCCCCCCCCCCCCCEE
TFGGFMSTTLEPGDTVIVPQRFERIAWMREIKDIAVILGNLALAAGVIVAAGL
EECCEEECCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLCGIHLVFAAEFFPTLSRELPQASPHRPAAALPTFTSLSSAAKASPPAEASSPRKNTEE
CCEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCC
GKTVTAKESSADADELSAIEKSVIAKAGAEDNTRPQPYEVQELRQFGYNFFRPAAAGFAP
CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCHHHCHHHCCCCC
LADIPVGPDYVIGPGDRIILNLWGSAEGTHELEVNRSGEIVLPRVGSVKVWGITFERLPE
CCCCCCCCCEEECCCCEEEEEEECCCCCCEEEEECCCCCEEEECCCCEEEEECCHHHHHH
VLKTHLSKIYKNFDLNVTMGKLRVIKVYVVGEVKMPGDYNLSPLSTLINALAASGGPLKT
HHHHHHHHHHHCCCCEEEECCEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCC
GTLRNIKIKRGGKVVETVDLYDFFLKGDKGKDIRLQPGDTIFVPVIGRVAGIAGNVKRPA
CCEEEEEEECCCCEEEEEHHHHHHEECCCCCEEEECCCCEEEEEHHHHHHHCCCCCCCCE
IYELKDEKNLGDLVELAEGFLPTGYLQRVQITRVDAHDKRMVADFNIDPKGAGKSLDQIV
EEEECCCCCHHHHHHHHHCCCCCCHHEEEEEEEECCCCCEEEEECCCCCCCCCCHHHHHH
QGIAIQDMDIVKIFPINATLRDHVRLDGYVLRPGVYALQPHMRLSQLLSQDNLLTEYYKD
HCCEECCCCEEEEEECCCCHHCCEEECCEEECCCCEEECCHHHHHHHHCCCCHHHHHHHH
AAEITRLYPPDSHLEKIFVSVAKALAGDPEHDLELKEFDEVRIFSRWEMEEMPKVKVNGE
HHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHCCHHHEEECCCHHHCCEEEECCC
VQRPGEYRLFANMTVRDLLMEAGNLKTSAYLKNAEINRISKTGESVSSFPIVINLEQALK
EECCCCEEEEECCHHHHHHHHCCCCCHHHEEECCHHHHHHHCCCCCCCCCEEEEEHHHHC
GDPKDNLVLAPFDEVTIRKIPNWAEEKERYVTLRGEFRFPGVYPIHKGEKLSALIERAGG
CCCCCCEEECCCCCHHHHHCCCHHHCCCEEEEEEECEECCCCCCCCCCHHHHHHHHHHCC
FTDKAYLRAAKYTREPLRELQQKRMDEMVAASEQEILKKQAELATTASSKEEVEATKAAL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
ESLQRSVALLKTAKAEGRLVIRLEQPDAFKGTASDVELMGGDTLEVPPQPHAVSVLGQVY
HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEECCCEEECCCCCHHHHHHHHHC
NPTSFIPENNEDVAFYLEKAGGPTRNAEKCDIYIVRADGTVLSRQQSSFGINWSDSQRRW
CCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCEEECCCCCCCCCCCCCCCEE
TFGGFMSTTLEPGDTVIVPQRFERIAWMREIKDIAVILGNLALAAGVIVAAGL
EECCEEECCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8021185 [H]