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The map label for this gene is ywhC [H]

Identifier: 78223168

GI number: 78223168

Start: 2185921

End: 2186601

Strand: Reverse

Name: ywhC [H]

Synonym: Gmet_1961

Alternate gene names: 78223168

Gene position: 2186601-2185921 (Counterclockwise)

Preceding gene: 78223179

Following gene: 78223167

Centisome position: 54.7

GC content: 56.39

Gene sequence:

>681_bases
ATGGAACAGTTTTTCCTCAAGTTTTCGATCATGCTTGTACCCGCCCTCATGGCGATCACCTGCCACGAGGTATCCCACGG
CTTCGTGGCCGACCGCTTGGGCGACCGGACGGCACGCTTCATGGGACGGCTCACTCTCAACCCCCTCAAGCATCTGGACA
TCCTGGGCACCCTCATGATCTTTCTTGTCGGCATCGGATGGGCCAAGCCGGTGCCGGTCAATTTTCACAACCTGAGAAAC
CCCAAGCGGGACATGATCTGGGTCGCCGGTGCCGGCCCGGTGACAAATTTTGTTCTTGCTCTATTCTCGGCCCTGATTAT
GCGAGGGCTCGCTGCCCTAGGCGCAGGGTTTCCCGACGGTTCCCATGCTCTAACGTTTCTTGACCCGCTGATTCTGATGA
CGGCCTTTTCGGTCTACATCAACCTGCTTCTCTGCATCTTCAACCTGATCCCGGTTCCTCCTCTTGACGGCGGACGGGTG
GCAGTGGGTTTGCTCCCCTATCGTCAGGCGGAGATGCTGGCGCGGGTGGAGCCCTACGGCATGATCATCATTATCCTGCT
GGTCTTTTTTACCAATATCTTCAGCTCGGTCATCTCACCGATCCTCGATATGGGGATCCGTATTCTTGCCGGGCCTCAAA
GCGGTCTGGTGTACAGCGTTACCCACTTTCTCATGAGATAA

Upstream 100 bases:

>100_bases
CTTTGGCAGGGACATAGTTGCCTTACCCTCCCGCAATTGACTTTCACTAGCCAATCTGCTAGAGATAAACGGCTTTTATG
TATCCGGAGAATCCCGCCCA

Downstream 100 bases:

>100_bases
ACGGCACAGCCGTCGATAAAAGGAGCAGACGATGAGCAACAAGCGGATAGTCAGCGGCATGAGGCCAACCGGAAAACTCC
ACCTTGGCCACTTCCACGGC

Product: peptidase M50

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MEQFFLKFSIMLVPALMAITCHEVSHGFVADRLGDRTARFMGRLTLNPLKHLDILGTLMIFLVGIGWAKPVPVNFHNLRN
PKRDMIWVAGAGPVTNFVLALFSALIMRGLAALGAGFPDGSHALTFLDPLILMTAFSVYINLLLCIFNLIPVPPLDGGRV
AVGLLPYRQAEMLARVEPYGMIIIILLVFFTNIFSSVISPILDMGIRILAGPQSGLVYSVTHFLMR

Sequences:

>Translated_226_residues
MEQFFLKFSIMLVPALMAITCHEVSHGFVADRLGDRTARFMGRLTLNPLKHLDILGTLMIFLVGIGWAKPVPVNFHNLRN
PKRDMIWVAGAGPVTNFVLALFSALIMRGLAALGAGFPDGSHALTFLDPLILMTAFSVYINLLLCIFNLIPVPPLDGGRV
AVGLLPYRQAEMLARVEPYGMIIIILLVFFTNIFSSVISPILDMGIRILAGPQSGLVYSVTHFLMR
>Mature_226_residues
MEQFFLKFSIMLVPALMAITCHEVSHGFVADRLGDRTARFMGRLTLNPLKHLDILGTLMIFLVGIGWAKPVPVNFHNLRN
PKRDMIWVAGAGPVTNFVLALFSALIMRGLAALGAGFPDGSHALTFLDPLILMTAFSVYINLLLCIFNLIPVPPLDGGRV
AVGLLPYRQAEMLARVEPYGMIIIILLVFFTNIFSSVISPILDMGIRILAGPQSGLVYSVTHFLMR

Specific function: Unknown

COG id: COG1994

COG function: function code R; Zn-dependent proteases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M50B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008915 [H]

Pfam domain/function: PF02163 Peptidase_M50 [H]

EC number: NA

Molecular weight: Translated: 24879; Mature: 24879

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQFFLKFSIMLVPALMAITCHEVSHGFVADRLGDRTARFMGRLTLNPLKHLDILGTLMI
CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
FLVGIGWAKPVPVNFHNLRNPKRDMIWVAGAGPVTNFVLALFSALIMRGLAALGAGFPDG
HHHHCCCCCCCCCCHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
SHALTFLDPLILMTAFSVYINLLLCIFNLIPVPPLDGGRVAVGLLPYRQAEMLARVEPYG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHCCCHH
MIIIILLVFFTNIFSSVISPILDMGIRILAGPQSGLVYSVTHFLMR
HHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHC
>Mature Secondary Structure
MEQFFLKFSIMLVPALMAITCHEVSHGFVADRLGDRTARFMGRLTLNPLKHLDILGTLMI
CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
FLVGIGWAKPVPVNFHNLRNPKRDMIWVAGAGPVTNFVLALFSALIMRGLAALGAGFPDG
HHHHCCCCCCCCCCHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
SHALTFLDPLILMTAFSVYINLLLCIFNLIPVPPLDGGRVAVGLLPYRQAEMLARVEPYG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHCCCHH
MIIIILLVFFTNIFSSVISPILDMGIRILAGPQSGLVYSVTHFLMR
HHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]