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The map label for this gene is ihfB [H]

Identifier: 78223040

GI number: 78223040

Start: 2047814

End: 2048095

Strand: Reverse

Name: ihfB [H]

Synonym: Gmet_1833

Alternate gene names: 78223040

Gene position: 2048095-2047814 (Counterclockwise)

Preceding gene: 78223041

Following gene: 78223039

Centisome position: 51.24

GC content: 50.35

Gene sequence:

>282_bases
ATGAACAAGTCTGAACTTATTGAGGCATTGGCGGCAGAAAAAGGGCTCACCTACAAGAAGGCGGAGGAGATTGTCTCCAT
AGTCTTCGATGCAATGACTGACGCCATGGTGCGGAACGAGCGGATCGAGATTCGCGGCTTCGGGAGTTTTGTCGTCAAGG
ATTACAAGGCTTATACGGGCAGAAACCCCAAAACGGGTGACCCCATTGAAGTGAAACCGAAAAAGCTTCCGTTCTTCAAA
GTCGGCAAGGAACTCAAGGAGCGGGTCGATAACGGTCAGTAA

Upstream 100 bases:

>100_bases
CGAATTTACTAAAGTTTTCGAGTCCGCATGCCGAAGAGCTTTCATGAGAGACGTACGTCTCTGCAATTCTTTCTCGATAC
CTAACCGGGAGGAGGTTGTG

Downstream 100 bases:

>100_bases
CCCCTTGCGCCGGCGTTCCGGTATCACCAGCTCTGTCGGAAGTTCAGCAGCCGTTGACAAAAAATTGTCTCTGTTCGAAA
CCCCTTTGGTGTCGTCGGAC

Product: histone-like DNA-binding protein

Products: NA

Alternate protein names: IHF-beta [H]

Number of amino acids: Translated: 93; Mature: 93

Protein sequence:

>93_residues
MNKSELIEALAAEKGLTYKKAEEIVSIVFDAMTDAMVRNERIEIRGFGSFVVKDYKAYTGRNPKTGDPIEVKPKKLPFFK
VGKELKERVDNGQ

Sequences:

>Translated_93_residues
MNKSELIEALAAEKGLTYKKAEEIVSIVFDAMTDAMVRNERIEIRGFGSFVVKDYKAYTGRNPKTGDPIEVKPKKLPFFK
VGKELKERVDNGQ
>Mature_93_residues
MNKSELIEALAAEKGLTYKKAEEIVSIVFDAMTDAMVRNERIEIRGFGSFVVKDYKAYTGRNPKTGDPIEVKPKKLPFFK
VGKELKERVDNGQ

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1787141, Length=91, Percent_Identity=47.2527472527472, Blast_Score=83, Evalue=3e-18,
Organism=Escherichia coli, GI1786644, Length=90, Percent_Identity=36.6666666666667, Blast_Score=71, Evalue=1e-14,
Organism=Escherichia coli, GI1788005, Length=92, Percent_Identity=34.7826086956522, Blast_Score=68, Evalue=1e-13,
Organism=Escherichia coli, GI1790433, Length=89, Percent_Identity=33.7078651685393, Blast_Score=62, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005685 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 10524; Mature: 10524

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKSELIEALAAEKGLTYKKAEEIVSIVFDAMTDAMVRNERIEIRGFGSFVVKDYKAYTG
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCC
RNPKTGDPIEVKPKKLPFFKVGKELKERVDNGQ
CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNKSELIEALAAEKGLTYKKAEEIVSIVFDAMTDAMVRNERIEIRGFGSFVVKDYKAYTG
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCC
RNPKTGDPIEVKPKKLPFFKVGKELKERVDNGQ
CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA